PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 895568 | ||||||||
Common Name | ARALYDRAFT_895568 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | Trihelix | ||||||||
Protein Properties | Length: 402aa MW: 46498 Da PI: 6.6961 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 82 | 7.8e-26 | 95 | 191 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +W++++v+++i+a ++++e++++++ +kk++W++vsk+m erg+++sp+qC++k+++lnkrykk++e+ +++ ++e++++ +++d+++ 895568 95 KWMDKMVKLMITALSYIGEDSSTSEvgcgrkfavlQKKGKWRSVSKVMDERGYRVSPQQCEDKFNDLNKRYKKLNEMLGRGtSCEVVENPALLDKID 191 7**********************988889999999**********************************************669****999999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 5.0E-21 | 93 | 217 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MEENCSQGGI VRGENAHGRF DSQVGSSMRD LRPNAMHQTQ NHPNSRHDSG CDITMEARHN 60 NVDRGKKSMS EEDELCLSCD GQNKSKNNSP WQRVKWMDKM VKLMITALSY IGEDSSTSEV 120 GCGRKFAVLQ KKGKWRSVSK VMDERGYRVS PQQCEDKFND LNKRYKKLNE MLGRGTSCEV 180 VENPALLDKI DYLNEKEKEE VRKIMSSKHL FYEEMCSYHN GNRLHLPHDP AVQRSLHLIT 240 LGSRDDHDND EHGQHQNEDL DDEDDGEEHH LSHGDCRGVH DDRPLKRLRQ SLSHEDPNKG 300 YDVPLLPRSQ ADVSGGMSLD SEKGTGLQRQ RIESKSLELE GRRLQIQAEL MELERQQFRW 360 EVFSKKRDQK LEKMRMENER MKLENERMTL ELKRIELGAK L* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00242 | DAP | Transfer from AT1G76870 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 895568 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493539 | 0.0 | AB493539.1 Arabidopsis thaliana At1g76870 mRNA for hypothetical protein, partial cds, clone: RAAt1g76870. | |||
GenBank | AC079283 | 0.0 | AC079283.4 Arabidopsis thaliana chromosome 1 BAC F7O12 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002887659.1 | 0.0 | uncharacterized protein LOC9325170 | ||||
TrEMBL | D7KTX8 | 0.0 | D7KTX8_ARALL; Uncharacterized protein | ||||
STRING | scaffold_202642.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5042 | 27 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76870.1 | 0.0 |
Link Out ? help Back to Top | |
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Phytozome | 895568 |
Entrez Gene | 9325170 |