PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 895409 | ||||||||
Common Name | ARALYDRAFT_895409 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bZIP | ||||||||
Protein Properties | Length: 174aa MW: 19137.3 Da PI: 6.9463 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 38.5 | 2.6e-12 | 41 | 81 | 5 | 45 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 ++ +rkq+NRe+ArrsR RK++ ++ L+ v L +eN + 895409 41 RKRKRKQSNRESARRSRMRKQKHLDDLTAQVTHLRKENAQI 81 5789**********************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.7E-11 | 37 | 116 | No hit | No description |
SMART | SM00338 | 8.5E-17 | 37 | 101 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.611 | 39 | 102 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 9.0E-10 | 41 | 81 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.81E-11 | 41 | 93 | No hit | No description |
CDD | cd14702 | 1.81E-21 | 42 | 92 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 44 | 59 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MNNKTEMGSS TSGNCSSVST TGLANSGSES DLRQRDLIDE RKRKRKQSNR ESARRSRMRK 60 QKHLDDLTAQ VTHLRKENAQ IVAGIAVTTQ HYVTIETEND ILRAQVLELN HRLQSLNEIV 120 DFVESSSSGF GMETGQGMID GGFYDGVMNP MNLGFYNQPI MASASTAGDV FNC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 40 | 45 | RKRKRK |
2 | 40 | 61 | RKRKRKQSNRESARRSRMRKQK |
3 | 53 | 60 | RRSRMRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00239 | DAP | Transfer from AT1G75390 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 895409 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC023754 | 0.0 | AC023754.3 Arabidopsis thaliana chromosome I BAC F1B16 genomic sequence, complete sequence. | |||
GenBank | AK318829 | 0.0 | AK318829.1 Arabidopsis thaliana AT1G75390 mRNA, complete cds, clone: RAFL14-51-H21. | |||
GenBank | AK318991 | 0.0 | AK318991.1 Arabidopsis thaliana AT1G75390 mRNA, complete cds, clone: RAFL21-81-N15. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002887591.1 | 1e-127 | bZIP transcription factor 44 | ||||
Swissprot | C0Z2L5 | 1e-124 | BZP44_ARATH; bZIP transcription factor 44 | ||||
TrEMBL | D7KSN7 | 1e-125 | D7KSN7_ARALL; BZIP transcription factor family protein | ||||
STRING | scaffold_202483.1 | 1e-126 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM501 | 28 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75390.1 | 1e-113 | basic leucine-zipper 44 |
Link Out ? help Back to Top | |
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Phytozome | 895409 |
Entrez Gene | 9323655 |
Publications ? help Back to Top | |||
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