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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
894298 |
| Common Name | ARALYDRAFT_894298 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
| Family |
bHLH |
| Protein Properties |
Length: 297aa MW: 31979.1 Da PI: 6.6068 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 894298 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 30.6 | 6e-10 | 208 | 249 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
++RR+ri +++ L+el+P+ +K++ +++LekA+ Y+k Lq
894298 208 AKNRRERISERLKILQELVPNG-----TKVDLVTMLEKAISYVKFLQ 249
69******************97.....8******************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 297 aa
Download sequence Send
to blast |
MALVNDHPNE TNYLSKQNSS SSEDLSSPGL DQPDAAYAGG GGGSASSSST MNSDHQQHQG 60
FVFYPSGEDP QNSLMDFNGS SFLNFDHHES FPPPAISCGG NSGAGGFSFL EGNNMSYGFT 120
NWNHQHHMDI ISPRSTETPQ GQKDWLYSDS TVVTTGSRHE SMSPKSAGNK RSQTGESTQP 180
SKKPNSGVTG KAKPKPTTSP KDPQSLAAKN RRERISERLK ILQELVPNGT KVDLVTMLEK 240
AISYVKFLQV QVKVLATDEF WPAQGGKAPD ISQVKDAIDA ILSSSQRDRN SNLITN*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AY128310 | 0.0 | AY128310.1 Arabidopsis thaliana unknown protein (At1g66470) mRNA, complete cds. |
| GenBank | BT006320 | 0.0 | BT006320.1 Arabidopsis thaliana At1g66470 mRNA, complete cds. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Coego A, et al.
The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
Plant J., 2014. 77(6): p. 944-53
[PMID:24456507] - Lin CY, et al.
Pathways involved in vanadate-induced root hair formation in Arabidopsis.
Physiol Plant, 2015. 153(1): p. 137-48
[PMID:24833217] - Grierson C,Nielsen E,Ketelaarc T,Schiefelbein J
Root hairs.
Arabidopsis Book, 2014. 12: p. e0172
[PMID:24982600] - Kim CM,Dolan L
ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon.
PLoS Genet., 2016. 12(8): p. e1006211
[PMID:27494519] - Moro CF, et al.
S-nitrosoglutathione promotes cell wall remodelling, alters the transcriptional profile and induces root hair formation in the hairless root hair defective 6 (rhd6) mutant of Arabidopsis thaliana.
New Phytol., 2017. 213(4): p. 1771-1786
[PMID:27880005] - Bahmani R,Kim DG,Kim JA,Hwang S
The Density and Length of Root Hairs Are Enhanced in Response to Cadmium and Arsenic by Modulating Gene Expressions Involved in Fate Determination and Morphogenesis of Root Hairs in Arabidopsis.
Front Plant Sci, 2016. 7: p. 1763
[PMID:27933081] - Liao X,Lovett B,Fang W,St Leger RJ
Metarhizium robertsii produces indole-3-acetic acid, which promotes root growth in Arabidopsis and enhances virulence to insects.
Microbiology (Reading, Engl.), 2017. 163(7): p. 980-991
[PMID:28708056] - Feng Y, et al.
Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis.
Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839
[PMID:29233944]
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