PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 894128 | ||||||||
Common Name | ARALYDRAFT_894128 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HSF | ||||||||
Protein Properties | Length: 118aa MW: 13757.7 Da PI: 6.229 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 55.8 | 1.3e-17 | 26 | 112 | 4 | 95 |
HHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHST..T--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 4 kklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFk..hsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 +lye+++d++++++isws +g+sf+v++e ef ++vL ++ ++++SF+R L++ g++kv++++++ we++ + F +++ + l+ 894128 26 PHLYEMVDDPSTDSIISWSGSGESFIVWNEPEFLRDVLLRHLGllYKEMTSFTRWLDVLGYRKVEESDEQ-------WEYAGDCFVNEHLHRLT 112 579***********************************9986422799********************99.......********998888775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PRINTS | PR00056 | 9.6E-7 | 24 | 47 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SMART | SM00415 | 1.6E-13 | 24 | 117 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 8.3E-21 | 26 | 111 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.33E-18 | 27 | 113 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 9.5E-15 | 27 | 112 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.6E-7 | 77 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MAAIVNQHRS VVNKARPRRR SCLVIPHLYE MVDDPSTDSI ISWSGSGESF IVWNEPEFLR 60 DVLLRHLGLL YKEMTSFTRW LDVLGYRKVE ESDEQWEYAG DCFVNEHLHR LTHSLLI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 894128 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010470854.1 | 5e-34 | PREDICTED: uncharacterized protein LOC104750710 | ||||
TrEMBL | D7KSC6 | 1e-81 | D7KSC6_ARALL; Uncharacterized protein | ||||
STRING | scaffold_201202.1 | 2e-82 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13231 | 11 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13980.1 | 3e-16 | HSF family protein |
Link Out ? help Back to Top | |
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Phytozome | 894128 |
Entrez Gene | 9324483 |