PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 89394
Common NameSELMODRAFT_89394
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family C3H
Protein Properties Length: 333aa    MW: 34815.5 Da    PI: 6.0411
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
89394genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.42.7e-09323425
             ---SGGGGTS--TTTTT-SS-S CS
  zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
             + C ++++ G C+yG+rCkF H
    89394  3 RACAYWLE-GSCRYGERCKFLH 23
             78******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.911126IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4125IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-7323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.73E-6324IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-7424IPR000571Zinc finger, CCCH-type
SuperFamilySSF509781.28E-3730327IPR017986WD40-repeat-containing domain
SMARTSM003209.7E-63069IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.7E-3832327IPR015943WD40/YVTN repeat-like-containing domain
PfamPF004008.3E-53369IPR001680WD40 repeat
PROSITE profilePS5008214.6193778IPR001680WD40 repeat
PROSITE profilePS5029414.13437238IPR017986WD40-repeat-containing domain
PROSITE patternPS0067805670IPR019775WD40 repeat, conserved site
PfamPF133601.8E-4120194IPR002372Pyrrolo-quinoline quinone repeat
SMARTSM003200.19151188IPR001680WD40 repeat
SMARTSM003201.9191229IPR001680WD40 repeat
SMARTSM0032074244283IPR001680WD40 repeat
SMARTSM0032011286325IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
TQRACAYWLE GSCRYGERCK FLHAATTVTG LALLTTLKEH KESITGIAMV PDSAVLFTGA  60
TDGTLRAWDC NSGTVSDTLR LEGPVEALAS GFGWIFAGAG HEVLAWNVKF SQQTLQARAP  120
GNVNALAVGK GLLVAGLGSG EVCAWEFGSG ELKSTGTLSK HPSAVTALTV AGGRVYSGSR  180
DGSIRVCEAE TGKSCATIVK AHAGELTGLL CWESFLLSCS LDSFIKVWAA TPAGTLENYF  240
TFPEGEEEIV GRSGVTGMCG SVDSDGKPVL VCSYRDSTVK VYGLPSFEER GALFSSAEVI  300
SLSSAAAGNN LVFSGDKQGA VKVWKWSKDL IK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-21343248320Tako8
6g6n_A2e-21343248320Tako8
6g6n_B2e-21343248320Tako8
6g6n_C2e-21343248320Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002968447.20.0zinc finger CCCH domain-containing protein 48 isoform X2
RefseqXP_024529279.10.0zinc finger CCCH domain-containing protein 48 isoform X1
TrEMBLD8RAW90.0D8RAW9_SELML; Uncharacterized protein (Fragment)
STRINGEFJ307010.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10651624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.18e-64C3H family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]