PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 893617
Common NameARALYDRAFT_893617
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family G2-like
Protein Properties Length: 118aa    MW: 13363 Da    PI: 9.8368
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
893617genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like863.9e-272476355
  G2-like  3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
             r +W++eLH++F++a++qLGG++kA+Pk+il  m+v+gLt+ +v+ HLQkYRl
   893617 24 RFVWSHELHQKFLNAIDQLGGNDKAIPKKILADMNVEGLTRLNVATHLQKYRL 76
             899*************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.3521979IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.8E-251980IPR009057Homeodomain-like
SuperFamilySSF466892.06E-172280IPR009057Homeodomain-like
TIGRFAMsTIGR015576.4E-242476IPR006447Myb domain, plants
PfamPF002491.2E-62675IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MGDFKSIEDP EIVQESRTRK NHGRFVWSHE LHQKFLNAID QLGGNDKAIP KKILADMNVE  60
GLTRLNVATH LQKYRLTLER TTEAQQLNMA TRQVPSFIQQ GHHQNSSNSA NPSESRT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-182482764ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap893617
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002888195.11e-83two-component response regulator ARR18
SwissprotQ9FGT74e-27ARR18_ARATH; Two-component response regulator ARR18
TrEMBLD7KXU13e-82D7KXU1_ARALL; Uncharacterized protein
STRINGscaffold_200691.15e-83(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2319824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58080.11e-29response regulator 18