PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 893515
Common NameARALYDRAFT_893515
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 334aa    MW: 38481.1 Da    PI: 7.2928
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
893515genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM44.26e-142113211128
     NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgr 112
             d+ ++++yLk+ + + +   +++i++vd+++ +P++     ++   ++ f + + +++a g r+    +sg W+  g+dk ++sk +g+  g kk+L f  ++
  893515  21 DDVIISRYLKRMIVNGDSWPDHFIEDVDVFNKNPNEEF---YS--PSTRFLIVKTRTEACG-RTDG-CESGCWRIIGRDKLIKSKeTGNILGFKKILKFCLKT 116
             77799*******98888666588***********9863...22..3455666667766665.5555.479*************99778889************ PP

     NAM 113 apkgektdWvmheyrl 128
             +p+  k +Wvm+eyr+
  893515 117 KPREYKRSWVMEEYRV 132
             **************97 PP
2NAM22.63e-0719431017128
     NAM  17 eyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy.......k 110
             +yL+k ++ + ++      + ++y+++P++L   +  k +e  +  F++r k+     ++      gyW     ++ ++sk+ge  g  +++ +         
  893515 194 FYLQKIIDYDGNTW-PSYVTNNVYRLHPSTLVdpQDDKFKEFGTCIFANRTKACG---KTDECDGGGYWTIVEGHRGIKSKTGEILGYSRVFQLSeneepitV 292
             57777776666555.3456679*********521333334447799999988775...56666789*****************************44333331 PP

     NAM 111 grapkgektdWvmheyrl 128
              + ++ ++t W+++eyrl
  893515 293 CEGEDVNETAWIIEEYRL 310
             23334459********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.41211150IPR003441NAC domain
PfamPF023657.6E-920132IPR003441NAC domain
SuperFamilySSF1019416.67E-2621149IPR003441NAC domain
SuperFamilySSF1019415.89E-21173324IPR003441NAC domain
PROSITE profilePS5100516.788177326IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MKAEGEGTYW LIKDELIKAE DDVIISRYLK RMIVNGDSWP DHFIEDVDVF NKNPNEEFYS  60
PSTRFLIVKT RTEACGRTDG CESGCWRIIG RDKLIKSKET GNILGFKKIL KFCLKTKPRE  120
YKRSWVMEEY RVTNNLNSKQ DHVICKIRFL FEAEISFLLA KHLSYLSTRS PRPANQLLPA  180
YGVCLFDTEA EGAFYLQKII DYDGNTWPSY VTNNVYRLHP STLVDPQDDK FKEFGTCIFA  240
NRTKACGKTD ECDGGGYWTI VEGHRGIKSK TGEILGYSRV FQLSENEEPI TVCEGEDVNE  300
TAWIIEEYRL DEKKKKDKVL CVIKKILIPL SPR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308318RLDEKKKKDKV
Cis-element ? help Back to Top
SourceLink
PlantRegMap893515
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE6017510.0HE601751.1 Arabidopsis halleri subsp. halleri BAC clone 9G1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002886627.20.0uncharacterized protein LOC9322693
RefseqXP_020889707.10.0uncharacterized protein LOC9322693
TrEMBLD7KXA60.0D7KXA6_ARALL; ANAC023
STRINGscaffold_200589.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60280.10.0NAC domain containing protein 23