PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 892725
Common NameARALYDRAFT_892725
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 321aa    MW: 36424 Da    PI: 7.0849
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
892725genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.3e-11128179155
             CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
             +r++h ++Er RR+ +N+ ++ Lr+l+P++   + ++ + a+i+   +++I++L+
  892725 128 QRMTHIAVERSRRKLMNEYLSVLRSLMPNS---YVQRCDQASIVGGSINFIRELE 179
             79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-14127193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.913127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-12127183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.57E-9127183No hitNo description
PfamPF000105.2E-9128179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-7133184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MALEGVFLQH DNIFSYNGKE AYSNIYTEDE PHFYDLQASL GFLDSQTENY NSSFLQEDYY  60
ENNTTFLHQP LPEIAISEAN ITANRNSSGS PNCDMSYHRD SEINTTRKKK ATRRRTRVKK  120
NKEEINSQRM THIAVERSRR KLMNEYLSVL RSLMPNSYVQ RCDQASIVGG SINFIRELEH  180
RLHLLNANRE QNKNSLSCRD ISSATPFSDA FKLPQISIGS SAVSENVVLN NALADIEVSL  240
VECHASLKIR SRRGPKILLN LVSGLQSLGF IILHLNVSTV SDFILYCFST KMEDYCKLNS  300
VADISTAVHE ILRIHDDCQK *
Cis-element ? help Back to Top
SourceLink
PlantRegMap892725
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002894606.10.0transcription factor bHLH94
SwissprotQ9C7T41e-60BH096_ARATH; Transcription factor bHLH96
TrEMBLD7KPZ40.0D7KPZ4_ARALL; Uncharacterized protein
STRINGscaffold_105519.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142991821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-62bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]