PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 892188
Common NameARALYDRAFT_892188
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 126aa    MW: 14577.7 Da    PI: 6.3516
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
892188genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.83e-1120113285
             EEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
      B3   2 fkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
             +k lt sd ++ g ++lpk+ +e++             +g+   ++++ +  e      ++++l   k+sgry+l++GW ++vka+g k++D + ++ d
  892188  20 KKNLTESDLSRYGFVILPKQDFEKIiphmerglvenlgNGV---EVKVHIVEEGHesDDYTLTL--IKCSGRYMLRGGWYNMVKAKGYKTNDEIGLTWD 113
             5889999********************99997766553333...23333333333226666666..**************************8888855 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.67E-1516121IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.8E-1117115IPR015300DNA-binding pseudobarrel domain
CDDcd100171.24E-1117122No hitNo description
SMARTSM010190.001519125IPR003340B3 DNA binding domain
PfamPF023621.6E-821119IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MAQELDLELG LAPYDPWVLK KNLTESDLSR YGFVILPKQD FEKIIPHMER GLVENLGNGV  60
EVKVHIVEEG HESDDYTLTL IKCSGRYMLR GGWYNMVKAK GYKTNDEIGL TWDKWTRRFL  120
LHHIN*
Cis-element ? help Back to Top
SourceLink
PlantRegMap892188
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0154481e-142AC015448.4 Arabidopsis thaliana chromosome I BAC T14L22 genomic sequence, complete sequence.
GenBankCP0026841e-142CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF5F191e-142AC006216.1 Arabidopsis thaliana chromosome 1 BAC F5F19 sequence, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002894345.16e-89putative B3 domain-containing protein At1g51970
SwissprotQ9ZU264e-73Y1197_ARATH; Putative B3 domain-containing protein At1g51970
TrEMBLD7KIM51e-87D7KIM5_ARALL; Uncharacterized protein
STRINGscaffold_104982.12e-88(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1494634