PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 891757
Common NameARALYDRAFT_891757
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family CO-like
Protein Properties Length: 327aa    MW: 38391 Da    PI: 5.7688
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
891757genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.72.4e-081153238
  zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
              ++r C+++++k++ ++C +++ +lC+ C ++ H+       H+
    891757 11 QQRACELCKNKHAVWYCASDDAFLCHVCDESVHSAnhvatkHE 53
              7899*****************************6575556665 PP
2CCT67.92.8e-23278321144
     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
             Rea++ RY++Krk+R+FeKkirYe+RK++A++RpR+KGrFv+++
  891757 278 REARVWRYRDKRKNRLFEKKIRYEVRKVNADKRPRIKGRFVRRS 321
             9****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.8651057IPR000315B-box-type zinc finger
SMARTSM003363.3E-91057IPR000315B-box-type zinc finger
PfamPF006435.1E-71154IPR000315B-box-type zinc finger
CDDcd000213.65E-101357No hitNo description
PfamPF062037.3E-18278320IPR010402CCT domain
PROSITE profilePS5101716.053278320IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MIWENQTDVK QQRACELCKN KHAVWYCASD DAFLCHVCDE SVHSANHVAT KHERVCLRTN  60
EISNYVLRGT TSNPVWHSGF RRKARTPRVR CEKKPQEKID DERRIEDPRV PEIGGEVMFF  120
IPEPNDDDMT SLVPEFEGFT EMGFFLNNHN GTEETTKQFN FEDEIDAKED LCYNGEDEEE  180
VKTDGAEACP EQYLMSCKKD YDNVITVSAK TEEIEDCYEN KARQRNMLLK LNYENVIAAW  240
DKQESPINQT EFNNTSNLQL VPPLQGIEEK RVSNRSEREA RVWRYRDKRK NRLFEKKIRY  300
EVRKVNADKR PRIKGRFVRR SLAMDS*
Cis-element ? help Back to Top
SourceLink
PlantRegMap891757
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3173810.0AK317381.1 Arabidopsis thaliana AT1G49130 mRNA, complete cds, clone: RAFL25-23-K13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002894160.10.0zinc finger protein CONSTANS-LIKE 8 isoform X1
RefseqXP_020870384.10.0zinc finger protein CONSTANS-LIKE 8 isoform X1
SwissprotQ9M9B30.0COL8_ARATH; Zinc finger protein CONSTANS-LIKE 8
TrEMBLD7KE070.0D7KE07_ARALL; Uncharacterized protein
STRINGscaffold_104551.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150481517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49130.10.0B-box type zinc finger protein with CCT domain