PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 890484
Common NameARALYDRAFT_890484
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 270aa    MW: 31045.5 Da    PI: 6.8515
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
890484genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.42.5e-086893126
             --S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
             ++ e+C+ + +tG C++G++C+++H+
   890484 68 PGVENCQCYIKTGLCRFGSSCRYNHP 93
             5789*********************8 PP
2zf-CCCH25.22.8e-08104124425
              ---SGGGGTS--TTTTT-SS-S CS
  zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
              ++C++f++ G Ck+G+ C F H
   890484 104 PICKYFLK-GSCKFGSACIFQH 124
              79******.***********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.5026795IPR000571Zinc finger, CCCH-type
SMARTSM003560.256794IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-56993IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-56995IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821100127IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-4100126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5102124IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-6104124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4105124IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MADARENQQE SERRSDETES ISIEEPKEKE DEDENLQEQR QSSIGSSIPS SAKRKERMTQ  60
SSPYPVRPGV ENCQCYIKTG LCRFGSSCRY NHPNQRPQVR IDAPICKYFL KGSCKFGSAC  120
IFQHIMDRNV AEPMYQSKIV PDSQMPDPRG HEAQENLQEQ RQRDSIERQG REAQENLHQQ  180
RFQDMPENQA VNAQQNLQEQ RRISIENERT EARLRIEQIR PTVAFPLNEY IRARVVLHEL  240
GFVTDSQGSF LGPNRCLGLG KHRSVSHCG*
Cis-element ? help Back to Top
SourceLink
PlantRegMap890484
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2373291e-82AC237329.1 Arabidopsis lyrata clone JGIFAFI-49G20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020870540.11e-112trichohyalin
SwissprotQ9C7P43e-76C3H9_ARATH; Putative zinc finger CCCH domain-containing protein 9
TrEMBLD7KDV30.0D7KDV3_ARALL; Uncharacterized protein
STRINGscaffold_103278.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15746914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29570.16e-73C3H family protein