 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
890483 |
| Common Name | ARALYDRAFT_890483 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
| Family |
C3H |
| Protein Properties |
Length: 474aa MW: 57684.3 Da PI: 7.5333 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 890483 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 19.9 | 1.3e-06 | 265 | 281 | 9 | 25 |
GGGTS--TTTTT-SS-S CS
zf-CCCH 9 fartGtCkyGdrCkFaH 25
++r G+Ck G+ CkF H
890483 265 YFRRGYCKLGSFCKFQH 281
6777************* PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 474 aa
Download sequence Send
to blast |
MADAGDNQRR SAEKESKSIE ETKENEDLGS GINDTGHHVY YYNQGDEEVR EYLKQERLKD 60
VEMRRRRHET ESRSIEKTKG THPDERTDRV QKTDSRSLPE KKGKEDSVLR KNEAGQIHDY 120
KHSTVDTREC LPQQRQLRDV VGMHRRRRET ESRFWHQGRD RSPIWRENEY RMRFDERTQD 180
WLDSDYESRW RVHERTPDWD WRDSESRMRF DERTQDRRGS ESQWVFDERT QRRHEPVRPG 240
EECWCLRCRN GRSCRYNHPT QLPQYFRRGY CKLGSFCKFQ HIRDRDVAET MYQDWRFDER 300
THRRHEIEYS GFRPEKREIR EHENPQKQIQ RNTERQGTVA QDNVQFHQQQ EEEMQRPQSH 360
TTQQQQSVQQ HQLLASHFNL YPLAEKLTDV IEAGTRDQNS DALIQRNTER QRMVNRAIER 420
QDMEPLIDAI VRGIMQERRE KEANLQQQRL QEIRENHSVD AHDQQKKQEL GFK*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC237329 | 1e-176 | AC237329.1 Arabidopsis lyrata clone JGIFAFI-49G20, complete sequence. |
