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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 888726 | ||||||||
Common Name | ARALYDRAFT_888726 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bZIP | ||||||||
Protein Properties | Length: 197aa MW: 22934.1 Da PI: 5.6804 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 41.5 | 3e-13 | 86 | 136 | 5 | 55 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +++rr+++NRe+ArrsR RK+ ++eL vk L + N L+++l++ ++ 888726 86 RKQRRMISNRESARRSRMRKQRHLDELWSQVKRLRTDNYCLIDKLNRVSES 136 79*******************************************998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.0E-12 | 82 | 146 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.243 | 84 | 136 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.0E-10 | 86 | 159 | No hit | No description |
SuperFamily | SSF57959 | 3.62E-12 | 86 | 135 | No hit | No description |
Pfam | PF00170 | 4.2E-11 | 86 | 138 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 5.98E-18 | 87 | 137 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 89 | 104 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF47661 | 3.34E-5 | 108 | 189 | IPR010989 | t-SNARE |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016192 | Biological Process | vesicle-mediated transport | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MNTIPAELTG YFHYLSPDKY NNQNPIMESE YFNMPSSPTS SSTFYHLNGL INNNKYSSSF 60 NGQDLMTSNN STSDDDHQQS MVIDERKQRR MISNRESARR SRMRKQRHLD ELWSQVKRLR 120 TDNYCLIDKL NRVSESHELA LKENAKLKEE TSDLRQLISE IKSNNEDDNS FLRELEDSIS 180 NSRSDSNQSG RDFELC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 98 | 105 | RRSRMRKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 888726 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC027134 | 0.0 | AC027134.4 Arabidopsis thaliana chromosome I BAC F13B4 genomic sequence, complete sequence. | |||
GenBank | AF332430 | 0.0 | AF332430.1 Arabidopsis thaliana clone C00105 (e) putative bZIP transcription factor (At1g13600) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | F21F23 | 0.0 | AC027656.4 Sequence of BAC F21F23 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002892761.1 | 1e-142 | basic leucine zipper 43 | ||||
TrEMBL | D7KQH3 | 1e-141 | D7KQH3_ARALL; BZIP transcription factor family protein | ||||
STRING | scaffold_101520.1 | 1e-141 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2892 | 24 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13600.1 | 1e-116 | basic leucine-zipper 58 |
Link Out ? help Back to Top | |
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Phytozome | 888726 |
Entrez Gene | 9326070 |