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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
888711 |
Common Name | ARALYDRAFT_888711 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
Trihelix |
Protein Properties |
Length: 413aa MW: 47287.7 Da PI: 7.3655 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
888711 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 86.4 | 3.3e-27 | 88 | 169 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
W ++e++ Li +rr m+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k++++++ s +++y++++e
888711 88 WVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGN---GSAKMSYYKEIE 169
********************************************************************94...566899***998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0042802 | Molecular Function | identical protein binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 413 aa
Download sequence Send
to blast |
MFISDKSRPS TDFYKDDNPN SSTTTTRDMM IDVTTTNESV DLQSHHHHNH NHHNRHLHQP 60 QPQQQILLGE SSGEDHEVKA PKKRAETWVQ DETRSLIMFR RGMDGLFNTS KSNKHLWEQI 120 SAKMREKGFD RSPTMCTDKW RNLLKEFKKA KHHDRGNGSA KMSYYKEIED ILRERNKKVT 180 PQYNKSPNTP PTSAKVDSFM QFTDKGFDDT SISFGSVEAN GRPALNLERR LDHDGHPLAI 240 TTVDAVAANG VTPWNWRETP GNGGDSHGQA FGGRVITVKF GDYTRRIGVD GSAEAIKEAI 300 RSAFGLRTRR AFWLEDEDQI IRCLDRDMPL GNYLLHLDNV CKTHLAGLAI RVCHYDESNQ 360 LPVHSEEKIF YTEEDYRDFL ARRGWTCLQV DGFRNIENMD DLQPGAVYRG VR*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK228305 | 0.0 | AK228305.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-74-C23. |
GenBank | ATHGT | 0.0 | L36806.1 Arabidopsis thaliana (clone pDGT1) GT-1 mRNA. |