PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 888596 | ||||||||
Common Name | ARALYDRAFT_888596 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 189aa MW: 20364.6 Da PI: 4.6194 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.6 | 1.1e-16 | 15 | 62 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r ++ +g+Wv+eIr+p++ ++r++lg++ tae+Aa+a++ a+++l+g 888596 15 YRGIR-CR-SGKWVSEIREPKK---TTRIWLGTYPTAEMAAAAYDVAALALKG 62 9***9.55.6*********854...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.0E-9 | 13 | 62 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.4E-28 | 14 | 76 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.271 | 14 | 70 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.3E-27 | 14 | 71 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-18 | 14 | 71 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.00E-16 | 15 | 70 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MGSSSLGSRR KDPAYRGIRC RSGKWVSEIR EPKKTTRIWL GTYPTAEMAA AAYDVAALAL 60 KGRGAVLNFP GSAQSYPVPE SKSAADIRTA AAAAAAMKGC EEGEEEKEAT EKNSSSSQFR 120 ARENHVNNEV ASSSWCGTEF MDEEEVLNMP NLLANMAEGM MVAPPSWMGS RPSDDSPENS 180 NDEDLWGY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-13 | 15 | 70 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 888596 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC025417 | 0.0 | AC025417.4 Genomic sequence for Arabidopsis thaliana BAC T12C24 from chromosome I, complete sequence. | |||
GenBank | AY560893 | 0.0 | AY560893.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g12630) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | DQ145776 | 0.0 | DQ145776.1 Arabidopsis thaliana Ap2/EREBP transcription factor (At1g12630) mRNA, complete cds. | |||
GenBank | DQ446245 | 0.0 | DQ446245.1 Arabidopsis thaliana clone pENTR221-At1g12630 AP2 domain-containing protein (At1g12630) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002889951.2 | 1e-136 | ethylene-responsive transcription factor ERF027 | ||||
Swissprot | Q38Q39 | 2e-84 | ERF27_ARATH; Ethylene-responsive transcription factor ERF027 | ||||
TrEMBL | D7KP96 | 1e-135 | D7KP96_ARALL; Uncharacterized protein | ||||
STRING | scaffold_101390.1 | 1e-135 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1957 | 27 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12630.1 | 8e-64 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | 888596 |
Entrez Gene | 9326014 |