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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 888314 | ||||||||
Common Name | ARALYDRAFT_888314 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 147aa MW: 17235.8 Da PI: 8.6538 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.7 | 7.4e-12 | 25 | 115 | 2 | 82 |
EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 k+l+ sd +++l+lpk+ +e++ + +++++l+d ++ s++v+l + + g+y+l+kGW+ +++ Lk+gD + + 888314 25 TKKLSDSDLCYRAQLYLPKQEMEQFilpemendlvrK--LGAGVEIKLRDIDNvsdDSYTVRL--KVRNGQYYLEKGWRLIKNDKCLKTGDHIGL 115 589999*****************99998877766432..237899***99988888*******..999999********************8755 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.8E-13 | 18 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.63E-15 | 19 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.12E-16 | 22 | 127 | No hit | No description |
SMART | SM01019 | 1.2E-8 | 24 | 130 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-8 | 26 | 116 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MAKNNDINLD LSLSQYVEDD PWVLTKKLSD SDLCYRAQLY LPKQEMEQFI LPEMENDLVR 60 KLGAGVEIKL RDIDNVSDDS YTVRLKVRNG QYYLEKGWRL IKNDKCLKTG DHIGLFWDKL 120 TGEFKFKHSE SQSIVKRVLI RHRRTN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 888314 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493445 | 1e-127 | AB493445.1 Arabidopsis thaliana At1g10455 gene for hypothetical protein, partial cds, clone: RAAt1g10455. | |||
GenBank | AC007067 | 1e-127 | AC007067.4 Genomic sequence for Arabidopsis thaliana BAC T10O24 from Chromosome 1, complete sequence. | |||
GenBank | AF170550 | 1e-127 | AF170550.1 Arabidopsis thaliana germin-like protein 7 (GLP7) gene, complete cds. | |||
GenBank | CP002684 | 1e-127 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002889808.1 | 1e-104 | B3 domain-containing protein At1g10455 | ||||
Swissprot | Q9XIK5 | 9e-74 | Y1045_ARATH; B3 domain-containing protein At1g10455 | ||||
TrEMBL | D7KKR3 | 1e-103 | D7KKR3_ARALL; Uncharacterized protein | ||||
STRING | scaffold_101108.1 | 1e-104 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19929 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08985.1 | 1e-08 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | 888314 |
Entrez Gene | 9325872 |