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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 887556 | ||||||||
Common Name | ARALYDRAFT_887556 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 358aa MW: 41662.2 Da PI: 4.3052 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 80.4 | 3.8e-25 | 5 | 133 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrk..nr.atksgyWkatgkdkevlskkge 98 p+G rF P+d lv +yL++ ve+k+ ++ i+++d+y ePw Lp+ v++ ++kewy+F++ k+ ++ +rk r + g+W++ ++e+++ +++ 887556 5 PVGSRFLPKDLGLVRFYLRNMVERKQSSF---ITTMDVYMDEPWLLPH-VNNplfKNKEWYYFVQLTKRRSSVQRKvpGRgGSEGGTWRSNDGKEEIKDGHQR 103 89***********************9666...9**************4.333455889******998888765554115666889**************999* PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 ++g +++++++++ + + +ktdW+m+ey+l 887556 104 VMGYQQSFTYHRKVHGELVKTDWLMQEYSL 133 ***********99999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.19E-32 | 3 | 150 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.27 | 4 | 150 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-14 | 5 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MKSFPVGSRF LPKDLGLVRF YLRNMVERKQ SSFITTMDVY MDEPWLLPHV NNPLFKNKEW 60 YYFVQLTKRR SSVQRKVPGR GGSEGGTWRS NDGKEEIKDG HQRVMGYQQS FTYHRKVHGE 120 LVKTDWLMQE YSLHKSDEQQ KLVLCRIRYK KQKKVNKIRR VNHQAHQTQV AENTNNILQS 180 QSVQEEADLT GLTDELEKMP EGQEDREEQE EVDLTDFPDE LETMLEGQED CEQQQEAELT 240 GFSDDPESML LDGEEDRDVT QQQQQQQQEE EIPVPTPMQN NNNNNNNVVM MMSNQQVQEE 300 AAGLIGLADD FAMTLLEGQE DRDVTQQQQQ QQEDDDMMVL MDNPNDALAL GNYEFII* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-13 | 3 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-13 | 3 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-13 | 3 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-13 | 3 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-13 | 3 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 8e-13 | 3 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 8e-13 | 3 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 8e-13 | 3 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 8e-13 | 3 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 8e-13 | 3 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 8e-13 | 3 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 8e-13 | 3 | 157 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 9e-13 | 3 | 157 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 9e-13 | 3 | 157 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 887556 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002892188.1 | 0.0 | NAC domain-containing protein 6 | ||||
Swissprot | Q9LR74 | 1e-104 | NAC6_ARATH; NAC domain-containing protein 6 | ||||
TrEMBL | D7KD97 | 0.0 | D7KD97_ARALL; Uncharacterized protein | ||||
STRING | scaffold_100350.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14026 | 9 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03490.1 | 4e-87 | NAC domain containing protein 6 |
Link Out ? help Back to Top | |
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Phytozome | 887556 |
Entrez Gene | 9328250 |