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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 887359 | ||||||||
Common Name | ARALYDRAFT_887359 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 202aa MW: 23131.9 Da PI: 5.3465 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 97.6 | 1.8e-30 | 12 | 144 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 p+ frF+Ptd+ ++++yL+ k g + +++++i++v+i +++PwdLp + k+++++k wyf+s+ d k ++ + +t+sgyWk+tg++++++ k 887359 12 PADFRFRPTDDVIIDYYLRLKHLGIEeGDVNHFITTVEISSYDPWDLPcSqikeKCSNDNKVWYFYSRDDYKFNE---EIWKTSSGYWKETGSNTPIIGKrkr 111 5669***************99777663677677**************9644555455577899****99998754...4446889*************99666 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyr 127 +g ++g kk+Lvf + +p+g+k+dWvmh y+ 887359 112 tNGVKIGEKKVLVFQSCANPNGSKSDWVMHVYQ 144 66777*************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-34 | 6 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.954 | 11 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.3E-18 | 12 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MESVYSIRID YPADFRFRPT DDVIIDYYLR LKHLGIEEGD VNHFITTVEI SSYDPWDLPC 60 SQIKEKCSND NKVWYFYSRD DYKFNEEIWK TSSGYWKETG SNTPIIGKRK RTNGVKIGEK 120 KVLVFQSCAN PNGSKSDWVM HVYQPTFLPP DQRAYVVCKV EFKSEDKDTP GNSDCVIELN 180 HPPIPCSSQN GASSTTIFEV G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-20 | 9 | 144 | 13 | 139 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 887359 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D7KB62 | 1e-148 | D7KB62_ARALL; Uncharacterized protein | ||||
STRING | scaffold_100153.1 | 1e-148 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19906 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02230.1 | 1e-43 | NAC domain containing protein 4 |
Link Out ? help Back to Top | |
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Phytozome | 887359 |
Entrez Gene | 9325458 |