PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

887272

Common Name

ARALYDRAFT_887272

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NAC

Protein Properties

Length: 296aa MW: 33426.9 Da PI: 6.526

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
887272	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.9	6.7e-52	7	131	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglk 103 lppGfrFhPtdeelv++yL++k++++++ + +i+e+d+yk++Pw+Lp + ++kewyfFs+rd+ky++g+r+nr++ sgyWkatg dk++ + vg+k 887272 7 LPPGFRFHPTDEELVMHYLCRKCASQSIAV-PIIAEIDLYKYDPWELPGLALYGDKEWYFFSPRDRKYPNGSRPNRSAGSGYWKATGADKPIGL--PKPVGIK 106 79***********************999.88***********6555689*********************************99..789 PP NAM 104 ktLvfykgrapkgektdWvmheyrl 128 k Lvfy g+apkgekt+W+mheyrl 887272 107 KALVFYAGKAPKGEKTNWIMHEYRL 131 *********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.8E-62	4	158	IPR003441	NAC domain
PROSITE profile	PS51005	60.395	7	158	IPR003441	NAC domain
Pfam	PF02365	1.5E-27	8	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009611	Biological Process	response to wounding
GO:0009788	Biological Process	negative regulation of abscisic acid-activated signaling pathway
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MSELLQLPPG FRFHPTDEEL VMHYLCRKCA SQSIAVPIIA EIDLYKYDPW ELPGLALYGD 60 KEWYFFSPRD RKYPNGSRPN RSAGSGYWKA TGADKPIGLP KPVGIKKALV FYAGKAPKGE 120 KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP AVYSDEIMEE 180 KPKVTEMVMP PPQQQAAATA TATASEFVYF DTSDSVPKLH TTDSSCSEQV VSPEFTSEVQ 240 SEPKWKDWSA VSNDNNTLDF GFNYIDATVD NAFGGGSSNQ MFPLQDMFMY MQKPY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-79	5	164	13	174	Stress-induced transcription factor NAC1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00121	DAP	Transfer from AT1G01720	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	887272

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF370617	0.0	AF370617.1 Arabidopsis thaliana OsNAC6 protein-like protein (T1N6.12) mRNA, complete cds.
GenBank	AY086063	0.0	AY086063.1 Arabidopsis thaliana clone 20909 mRNA, complete sequence.
GenBank	BT024513	0.0	BT024513.1 Arabidopsis thaliana At1g01720 mRNA, complete cds.
GenBank	X74755	0.0	X74755.1 A.thaliana ATAF1 mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002892047.1	0.0	NAC domain-containing protein 2
Swissprot	Q39013	0.0	NAC2_ARATH; NAC domain-containing protein 2
TrEMBL	D7KP79	0.0	D7KP79_ARALL; Uncharacterized protein
STRING	scaffold_100066.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM190	28	276

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	0.0	NAC family protein

Link Out ? help Back to Top
Phytozome	887272
Entrez Gene	9325419

Publications ? help Back to Top
Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]