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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
886163 |
| Common Name | ARALYDRAFT_685607 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
WOX |
| Protein Properties |
Length: 262aa MW: 29235.4 Da PI: 9.6103 |
| Description |
WOX family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 886163 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 63.4 | 3.4e-20 | 13 | 72 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
+R+++tk+q++ Le+l+++ r+psa+++++++ +l +++ ++V++WFqN++a++++
886163 13 SRWNPTKDQITLLENLYKQgIRTPSADQIQQITGRLraygHIEGKNVFYWFQNHKARQRQ 72
8*****************99**************************************97 PP
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| 2 | Wus_type_Homeobox | 115.1 | 3.3e-37 | 11 | 74 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
+++RW+Pt++Qi++Le+lyk+G+rtP++++iq+it +L++yG+ie+kNVfyWFQN+kaR+rqkq
886163 11 SSSRWNPTKDQITLLENLYKQGIRTPSADQIQQITGRLRAYGHIEGKNVFYWFQNHKARQRQKQ 74
689***********************************************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 262 aa
Download sequence Send
to blast |
MENEGNVGTA SSSRWNPTKD QITLLENLYK QGIRTPSADQ IQQITGRLRA YGHIEGKNVF 60
YWFQNHKARQ RQKQKQERMA YFNRLLHKTS RFFHPPPCSN GTFLPFSLGC VSPYYLQQVG 120
LNQQHGSVYT NDLLHRNNVM IPSGGYEKRT TTEHKKQLSD STSTRMPMSS SSLRYDRFAL 180
RDHCYYGEGI NGNSSGRKTL PLFPLQPLDA TNDDGVGNSS FALGSDSPGV CSGDGGGREQ 240
PFIDFFSGGT SRRFDSSGNA L*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in embryonic patterning. Required for apical embryo development after fertilization. Its specific localization to the apical daughter cell of the zygote, while WOX8 is confined to the basal cell, suggests that the asymmetric division of the plant zygote separates determinants of apical and basal cell fates. {ECO:0000269|PubMed:14711878}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB016890 | 1e-129 | AB016890.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNC17. |
| GenBank | CP002688 | 1e-129 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
| Publications
? help Back to Top |
- Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
Plant Cell Physiol., 2015. 56(9): p. 1855-66
[PMID:26220906] - Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S
WUSCHEL-RELATED HOMEOBOX 2 is important for protoderm and suspensor development in the gymnosperm Norway spruce.
BMC Plant Biol., 2016. 16: p. 19
[PMID:26786587] - Zhang Z,Tucker E,Hermann M,Laux T
A Molecular Framework for the Embryonic Initiation of Shoot Meristem Stem Cells.
Dev. Cell, 2017. 40(3): p. 264-277.e4
[PMID:28171749]
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