PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 885294
Common NameARALYDRAFT_684738
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MIKC_MADS
Protein Properties Length: 200aa    MW: 23195.8 Da    PI: 9.74
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
885294genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.71.5e-28959151
            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
            k+ien + rqvtfskRr g++KKA+ELSvLCda+va i+fs++g+l+eyss
  885294  9 KKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAIVFSQSGRLHEYSS 59
            68***********************************************96 PP
2K-box66.78.3e-23851711197
   K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
             e+  ++l+ e++++ k+i+ L+  +R+llG++L+s+s+ eLq++ +q+eksl+ +Rs+K el+ +q+++l++ke+el +e k+Lr++
  885294  85 ERYLQELKMEMNRMVKKIDLLEVHHRKLLGQGLDSCSVTELQEIDTQIEKSLRIVRSRKAELYADQLKKLKEKERELLNERKRLREE 171
             556799******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.314161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-32387IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-29323IPR002100Transcription factor, MADS-box
CDDcd002653.69E-41375No hitNo description
PfamPF003196.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.33788179IPR002487Transcription factor, K-box
PfamPF014867.0E-2289171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAIVFSQ SGRLHEYSSS  60
EMEKIIERYD KFTNALYVAE RPQIERYLQE LKMEMNRMVK KIDLLEVHHR KLLGQGLDSC  120
SVTELQEIDT QIEKSLRIVR SRKAELYADQ LKKLKEKERE LLNERKRLRE EGKTEGGCST  180
KHSSEVETDL FIGLPVTRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-19173173MEF2 CHIMERA
6byy_B3e-19173173MEF2 CHIMERA
6byy_C3e-19173173MEF2 CHIMERA
6byy_D3e-19173173MEF2 CHIMERA
6bz1_A3e-19173173MEF2 CHIMERA
6bz1_B3e-19173173MEF2 CHIMERA
6bz1_C3e-19173173MEF2 CHIMERA
6bz1_D3e-19173173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap885294
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1412200.0AY141220.1 Arabidopsis thaliana MADS-box protein AGL71 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872012.11e-136MADS-box protein AGL71 isoform X1
RefseqXP_020872013.11e-137MADS-box protein AGL71 isoform X2
SwissprotQ9LT931e-131AGL71_ARATH; MADS-box protein AGL71
TrEMBLD7MRJ81e-141D7MRJ8_ARALL; Predicted protein
STRINGAl_scaffold_0008_15581e-142(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.11e-116AGAMOUS-like 71