PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 884408
Common NameARALYDRAFT_683852
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 313aa    MW: 35855.3 Da    PI: 7.5249
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
884408genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.38.8e-30112168258
             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
             dDgy+WrKYGqK++k+s++prsYY+Ct + C++kk+vers ++p++ +itYeg H h
  884408 112 DDGYKWRKYGQKSIKNSPNPRSYYKCTNPICNAKKQVERSIDEPNTYIITYEGFHFH 168
             8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.3E-28104168IPR003657WRKY domain
PROSITE profilePS5081126.555106171IPR003657WRKY domain
SuperFamilySSF1182901.96E-25109169IPR003657WRKY domain
SMARTSM007742.1E-35111170IPR003657WRKY domain
PfamPF031061.4E-24112168IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MAEKGSQWTR RCGNDAVEDI FVNEPPLFFL SQEQHHRLMP YEDSITNKFV TSTLYSGPRI  60
QDIANALVLV EPLSHPVREI SKSTVPRLER STLNKVDKYT LKVKNNSNGM CDDGYKWRKY  120
GQKSIKNSPN PRSYYKCTNP ICNAKKQVER SIDEPNTYII TYEGFHFHYT YPFFLPDKTH  180
QWPNKKTKIH KYYAQEMNNG SQTQEESKEA QLGEPANQNQ PVHKAQENTP VNLEDELFFP  240
VDQCRRQQGL LEDVVAPAMK NIPTKDSVLT ASWSSLSSYT SSSLSPSSLC WSPNFDIVLS  300
DEILELIGSR KF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-191101681674Probable WRKY transcription factor 4
2lex_A4e-191101681674Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap884408
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1764430.0AK176443.1 Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL24-21-D20.
GenBankBT0104240.0BT010424.1 Arabidopsis thaliana At5g43290 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002863668.10.0probable WRKY transcription factor 49
SwissprotQ9FHR71e-176WRK49_ARATH; Probable WRKY transcription factor 49
TrEMBLD7MP880.0D7MP88_ARALL; Predicted protein
STRINGAl_scaffold_0008_6720.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94052637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.11e-174WRKY DNA-binding protein 49