PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 884150 | ||||||||
Common Name | ARALYDRAFT_683594 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | WRKY | ||||||||
Protein Properties | Length: 1361aa MW: 153343 Da PI: 5.5667 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.6 | 1.4e-29 | 1170 | 1228 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D + WrKYGqK++kgs++pr+YY+Cts+ gC+++k++ers++dp++++itY eHnh+ 884150 1170 ADLWVWRKYGQKPIKGSPYPRNYYKCTSSkGCSARKQIERSRTDPNMLVITYITEHNHP 1228 799************************999****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52200 | 1.94E-5 | 8 | 102 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
Pfam | PF01582 | 4.8E-5 | 15 | 100 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
SuperFamily | SSF52540 | 9.34E-48 | 131 | 395 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF00931 | 6.2E-27 | 160 | 404 | IPR002182 | NB-ARC |
Gene3D | G3DSA:3.40.50.300 | 7.5E-10 | 167 | 290 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PRINTS | PR00364 | 2.7E-23 | 169 | 184 | No hit | No description |
PRINTS | PR00364 | 2.7E-23 | 242 | 256 | No hit | No description |
PRINTS | PR00364 | 2.7E-23 | 335 | 349 | No hit | No description |
SuperFamily | SSF46785 | 2.99E-11 | 375 | 472 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF52058 | 1.7E-30 | 507 | 824 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 5.2E-28 | 511 | 822 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Pfam | PF07725 | 9.2E-9 | 575 | 594 | IPR011713 | Leucine-rich repeat 3 |
PRINTS | PR00364 | 2.7E-23 | 749 | 765 | No hit | No description |
SuperFamily | SSF46785 | 4.08E-6 | 1034 | 1118 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE profile | PS50811 | 31.33 | 1164 | 1230 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 9.5E-29 | 1166 | 1230 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.03E-24 | 1168 | 1230 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.9E-35 | 1169 | 1229 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.3E-24 | 1171 | 1228 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0005774 | Cellular Component | vacuolar membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043531 | Molecular Function | ADP binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1361 aa Download sequence Send to blast |
MADSEQLVCI SCVSEVRYSF VSHLSEALRR KGISSVIIDV DSDDLLSKES QAKIEISRVS 60 VMVLSRICEP TRVCQNFVNV IECQRNKNQV VVPVLYGESP LLGEWLSVLD LRDLSPVHQS 120 RKDCSDSQFV KEIVRDVYEK LFYKGRIGIY SKLLEIEKMV CKQPLGIRCV GIWGMPGIGK 180 TTLAKAVFDQ MSGEFDASCF IEDYSKAIQE KGVYCLLEEQ FLKENAGGAG GTVTKLSLLR 240 NKLNNKRVLV VLDDVRSPLV VESFLGGFDW FGPKSLIIIT SRDKQVFRLC RVDQIYEVLG 300 LNEKEALQLF SFCASIDDMA EQSLHEVSMK VVKYASGHPL ALSLYGRELK GKKTLPEMET 360 TFLELKEHPP TMFVDAIKSC YDTLNDREKN IFLDIACFFE GENVDYVMQL LEGCGFFPHV 420 GIDVLVEKCL VTITENQVRM HNLIQNVGRQ IINRETRQTK RRDRLWEPWS IKYLLEDNGE 480 KENGEHKTTL ERAQGPEEIE GMFLDTSNFS FDIKPAAFDN MLNLRLLKIY SSNPEVHHVK 540 NFLKGSLNSL PNELRLLHWE NYPLQFLPQN FDPIHLVEIN MPYSQLKKLW GGTKNLEMLK 600 TIRLCHSQQL VDIDDVLKAQ NLEVIDLQGC TRLQSFPATG QLLHLRTVNL SGCTEIKSFP 660 EIPPNIETLN LQGTGIIELP LSIIKPNYTE LLNLLAEIPG LSGVSNLEQS DLKPLTSLMK 720 MSTSNQNLGK LICLELKDCA RLRSLPNMNN LELLKVLDLS GCSELETIQG FPQNLKELYL 780 AGTAVRQVPQ LPQSLELFNA HGCVSLKSIR VDFEKLPVHY TLSNCFDLCP KVVSDFLVQA 840 LANAKRIPRE HQQELNKTLA FSFCAPSHAN QNSKLDLQLG SSVMTRLNPS WRNTLVGFAM 900 LVEVAFSEDY YDATGFGISC VCKWKNKEGH SHRIERNLHC WALGKAVQKD HMFVFCDDNL 960 RPSTDEGIDP DIWADLVVFE FFPVNNQTRL LGDSCTVTRC GVRVITPPNC NTSLEISSSV 1020 LSLDPMEVSG NEGEEVLRVS YDGLQEIDKA LFLYLAGLFN DEDVDLVAPL IANSIDMDVS 1080 YGLKVLADRS LIRVSSNGEI VMYNLQQEMG KEILHTESKK TDRLVDNSQS SMIDSKEIEI 1140 THSKNRRKKS RAKKVVRVLD PGSRSSEEVA DLWVWRKYGQ KPIKGSPYPR NYYKCTSSKG 1200 CSARKQIERS RTDPNMLVIT YITEHNHPSP TQRNALAGST HSPSSSKCSA VTTSDSCRVS 1260 QHKDEPDKSH LPSSPASPPY AAMVIKEEDM ERRDNMEFDD DVEDTLIPEL FPEDIFADLD 1320 KLESNSQTMF LSNSSSGGNM ENQGRNSSDD MGINLPNKTL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4c6t_A | 1e-47 | 2 | 148 | 3 | 151 | PROBABLE WRKY TRANSCRIPTION FACTOR 52 |
4c6t_C | 1e-47 | 2 | 148 | 3 | 151 | PROBABLE WRKY TRANSCRIPTION FACTOR 52 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Acts also as a disease resistance protein that specifically recognizes the AvrRps4 type III effector avirulence protein from P.syringae. Heterodimerization with RPS4B is required to form a functional complex to recognize AvrRps4 and to mediate the hypersensitive response (PubMed:25744164). {ECO:0000250|UniProtKB:P0DKH5, ECO:0000269|PubMed:25744164}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 884150 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB019224 | 0.0 | AB019224.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K17O22. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002863534.1 | 0.0 | probable WRKY transcription factor 16 isoform X1 | ||||
Swissprot | Q9FL92 | 0.0 | RRS1B_ARATH; Disease resistance protein RRS1B | ||||
TrEMBL | D7MKY8 | 0.0 | D7MKY8_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0008_414 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2506 | 8 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45050.1 | 0.0 | Disease resistance protein (TIR-NBS-LRR class) |
Link Out ? help Back to Top | |
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Phytozome | 884150 |
Entrez Gene | 9301376 |