PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 884135
Common NameARALYDRAFT_683579
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 1338aa    MW: 151033 Da    PI: 5.947
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
884135genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.14.8e-3011461204259
              --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
    WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59  
               D++ WrKYGqK++kgs++pr+YY+Cts+ gC+++k+vers++dp++++itY +eHnh+
  884135 1146 ADQWVWRKYGQKPIKGSPYPRNYYKCTSSkGCSARKQVERSRTDPNMLVITYISEHNHP 1204
              79*************************999****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF522005.49E-58100IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525401.44E-48132395IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009311.2E-27160404IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3009.6E-10167290IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003642.6E-23169184No hitNo description
PROSITE profilePS509759.468185397IPR011761ATP-grasp fold
PRINTSPR003642.6E-23242256No hitNo description
PRINTSPR003642.6E-23335349No hitNo description
SuperFamilySSF520581.7E-30490808IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.102.4E-27494805IPR032675Leucine-rich repeat domain, L domain-like
PfamPF077259.0E-9558577IPR011713Leucine-rich repeat 3
PRINTSPR003642.6E-23732748No hitNo description
SuperFamilySSF467859.52E-610171101IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:2.20.25.802.9E-2911371206IPR003657WRKY domain
SuperFamilySSF1182908.5E-2611401206IPR003657WRKY domain
PROSITE profilePS5081131.66311401206IPR003657WRKY domain
SMARTSM007742.3E-3611451205IPR003657WRKY domain
PfamPF031066.5E-2511471204IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007165Biological Processsignal transduction
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1338 aa     Download sequence    Send to blast
MADSEQLVCI SCVSEVRYSF VSHLSEALRR KGINSVIIDV DSDDLLSKES QAKIEISSVS  60
VMVLSRICEP TRVCHNFVKV LECQRDKNHV VVPVLYGESP LLGEWLSVLD LRDLSPVHQS  120
RKECSDSQLV KEIVRDVYEK PFYKGRIGIY SKLLEIEKMV CKQPLGIRCV GIWGMPGIGK  180
TTLAKAVFDQ MSGEFDASCF IEDYSKAIQE KGVYCLLEEQ FLKENAGGAG GTVTKLSLLR  240
DKLNNKRVLV VLDDVRSPLV VESFLGGFDW FGPKSLIIIT SRDKSVFRLC RVNQIYEVHG  300
LNEKEALQLF SMCASIDDMA EQNLHEVSMK VIKYANGHPL ALSLYGRELK GKKRPPEMET  360
AFLQLKERPP NIFVDAIKSC YDTLNDREKD IFLDIACFFQ GENVDYVMQV LEGCGFFPHV  420
GIDVLVEKYV GRHIINRETR QTKRRDRLWE PWSIKYLLED NGEKENGEHK TTLERAQGPE  480
EIEGMFLDTS NFSFDIKPAA FDNMLNLRLL KIYSSNPEVH HVKNFLKGFL NSLPNELRLL  540
HWENYPLQFL PQNFDPIHLV EINMPYSQLK KLWGGTKNLE MLKTIRLCHS QQLVDIDDVL  600
KAQNLEVIDL QGCTRLQSFP ATGQLLHLRI VNLSGCTEIK SFPEIPPNIE TLNLQGTGII  660
ELPLSIIKPN YTELLNLLAE IPGLSGVSNL EQSDLKPLTS LMKMSTSNQN LGKLICLELK  720
DCARLRSLPN MNNLELLKVL DLSGCSELET IQGFPQNLKE LYLAGTAVRQ VPQLPQSLEL  780
FNAHGCVSLK SIRVDFEKLP VHYTLSNCFD LCPKVVSNFL VQALANAKRI PREHQQELNK  840
TLAFSFCAPS HANQNSKLDL QLGSSVMTRL NPSWRNTLVG FAMLVEVAFS EDYYDATGFG  900
ISCICKWKNK EGHSHRIERN LHCWALGKAV QKDHMFVFCD DNLRPSTDEG IDPDIWADLV  960
VFEFFPVNNQ TRLLGDSCTV TRCGVRVITP PNCNTSLEIS SSVLSLDPME VSGNEGEEVL  1020
RVSYDGLQEI DKALFLYLAG LFNDEDIDLV APLIANIIDM DVSYGLKVLA DRSLIRVSSN  1080
GEIVMYNLQR EMGKEILHTE SKKTDRLVDN IQSSMIDSKE IEITHSKNRR KKSRAKKVLW  1140
SIEEVADQWV WRKYGQKPIK GSPYPRNYYK CTSSKGCSAR KQVERSRTDP NMLVITYISE  1200
HNHPSPTQRN ALAGSTHSPS SSKCSAVTTS DSCRVSQHKD EPDKSHLPSS PASPPYAAMV  1260
IKEEDMERRD NMEFDDDVED TLIPELFPED FFADLNKLES NSQTMFQSHS SSGGNMENQG  1320
RNSSSDDMGA NLPNKTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4c6t_A1e-4821483151PROBABLE WRKY TRANSCRIPTION FACTOR 52
4c6t_C1e-4821483151PROBABLE WRKY TRANSCRIPTION FACTOR 52
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Acts also as a disease resistance protein that specifically recognizes the AvrRps4 type III effector avirulence protein from P.syringae. Heterodimerization with RPS4B is required to form a functional complex to recognize AvrRps4 and to mediate the hypersensitive response (PubMed:25744164). {ECO:0000250|UniProtKB:P0DKH5, ECO:0000269|PubMed:25744164}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap884135
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0192240.0AB019224.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K17O22.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871855.10.0LOW QUALITY PROTEIN: probable WRKY transcription factor 16
SwissprotQ9FL920.0RRS1B_ARATH; Disease resistance protein RRS1B
TrEMBLD7MKX10.0D7MKX1_ARALL; Predicted protein
STRINGAl_scaffold_0008_3990.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2506814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45050.10.0Disease resistance protein (TIR-NBS-LRR class)