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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
883868 |
| Common Name | ARALYDRAFT_683312 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
| Family |
bHLH |
| Protein Properties |
Length: 504aa MW: 56454.3 Da PI: 4.9723 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 883868 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 37.5 | 4.2e-12 | 337 | 382 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
+h e+Er RR+++N++f Lr ++P+ + K++K + Le Av+YI++L
883868 337 NHVEAERMRREKLNHRFYALRAVVPNiS------KMDKTSLLEDAVHYINEL 382
799***********************66......***************998 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 504 aa
Download sequence Send
to blast |
MINSDDNLSM IEALFTSDLS PLPPANLSLE TTLPKRLHAV LNGTNEPWTY VIFWKPSYDY 60
DISGESVLKW SDGVYNGGDE EKTRERLRRK KTIPSSPAER ERRSNVLREL NSMISGEAFP 120
VVEDEYVNKD DDVEAEVTDM EWFFLVSMTW SFGSGSGLAG KAFASYNPVW VTGSDQIYGS 180
GCDRAKQGGD LGLQTIVCIP SDNGVLELGS TEHIQQNSDL FNRIRFLFNF DGSKDFPGAP 240
NLNSELFSFQ LETGFSSTVT DNPNPSYNLN FSTSCSTSAR ASCGDVLSFS DIVKQSSENL 300
NPNTYSDQIQ NATVMPEKKQ GKKRGRKPAH GRDQPLNHVE AERMRREKLN HRFYALRAVV 360
PNISKMDKTS LLEDAVHYIN ELKSKAENAE SEKNAIQIQL NELKEMAGQR NAIPSVFKYE 420
ENASEMKIEV KIMGNDAMVR VESSKSHHPG ARLMNALMDL ELEVNNASMS VMNDFMIQQA 480
NVKMGLRIYK QEELRDVLIS KIS*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4rqw_A | 1e-47 | 30 | 231 | 6 | 195 | Transcription factor MYC3 |
| 4rqw_B | 1e-47 | 30 | 231 | 6 | 195 | Transcription factor MYC3 |
| 4rs9_A | 1e-47 | 30 | 231 | 6 | 195 | Transcription factor MYC3 |
| 4yz6_A | 1e-47 | 30 | 231 | 6 | 195 | Transcription factor MYC3 |
| Search in ModeBase |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB022221 | 0.0 | AB022221.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSD23. |
| GenBank | AB493781 | 0.0 | AB493781.1 Arabidopsis thaliana At5g46830 mRNA for hypothetical protein, partial cds, clone: RAAt5g46830. |
| GenBank | AF252636 | 0.0 | AF252636.1 Arabidopsis thaliana putative transcription factor bHLH28 mRNA, complete cds. |
| GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Chen X,Huang H,Qi T,Liu B,Song S
New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis.
Plant Signal Behav, 2016. 11(2): p. e1135280
[PMID:26829586] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470] - Song S, et al.
MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses.
Plant Cell Physiol., 2017. 58(10): p. 1752-1763
[PMID:29017003] - Min JH, et al.
Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
Front Plant Sci, 2017. 8: p. 2100
[PMID:29321786]
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