PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 883757
Common NameARALYDRAFT_683201
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 392aa    MW: 44850.4 Da    PI: 6.4073
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
883757genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.56.5e-27296377185
  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
               rW+++ev+aLi  r+++ee+ + +  k++ W+e+s++m+erg+ers+k+Ckekwen+nk+y++++eg +k+ +e+s+t +yf++l
    883757 296 RWPQEEVQALISTRSDVEEKTGIN--KGAIWDEISERMKERGYERSAKKCKEKWENMNKYYRRVTEGGGKQ-PEHSKTRSYFEKL 377
               8******************99988..99*****************************************95.9**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.8E-5294379IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.7E-5295351IPR009057Homeodomain-like
PfamPF138372.8E-20295377No hitNo description
CDDcd122033.23E-23295358No hitNo description
PROSITE profilePS500907.642296351IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MELLAGDCRK RVGDDFDEDV NPFDGSDGGC GWMYGSRQSG NDDALATLAD LASPPQKLKP  60
IRCGVKLPSE DRHPLDILAG TLDRLPEMGF GCFEAPLGSK IADVEQSGQL TRGFSKEDDD  120
SLPLQMEFQA RNRISWDGLS LSSSVDSDSD SSSDVRKTVT GKRKRETRVK LEHFLEKLVG  180
SMMKRQEKMH NQLIKVMEKM EGERIRREEA WRQQEIERMI QNEEARKQEL ARSLSLISFI  240
RSVIGDEIEI PKHFEFPQPL QQILPEQCKE EKCESAQTQR EIKFRYSSGS GNSGRRWPQE  300
EVQALISTRS DVEEKTGINK GAIWDEISER MKERGYERSA KKCKEKWENM NKYYRRVTEG  360
GGKQPEHSKT RSYFEKLGNF YKTNSSGERE K*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap883757
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256280.0AB025628.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNJ7.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865109.10.0trihelix transcription factor GTL1
TrEMBLD7MP230.0D7MP23_ARALL; Predicted protein
STRINGAl_scaffold_0008_210.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.10.0Trihelix family protein