PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 881438
Common NameARALYDRAFT_680882
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 300aa    MW: 33872.7 Da    PI: 7.8389
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
881438genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.18.4e-051902231553
             HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
     HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
             ++++++ +L++++ +      +K + a++L++A+ YI+ 
  881438 190 KLRDKITTLQQIVSPF-----GKTDTASVLQEAITYINF 223
             7899999999999998.....8***************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.508175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-9189239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.71E-4189229No hitNo description
Gene3DG3DSA:4.10.280.103.9E-7190232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDRPTCHNDN GWVYDTNQVR YDQSSDQRLS KLTDLVGKHW SIAPPNNPDM NHNLHHHFDH  60
DHSQTNDDVS MYRQALEVKN EEDLCYNNGS SGGGSLFHDP TESSRNFLDV RLSRPLTDIN  120
PSFKPCFKAL NVSEFNKKEQ QTASLAAGRL GTTNAGKKKR CEEISDEVSK KAKCSAGSTL  180
SPEKELPKAK LRDKITTLQQ IVSPFGKTDT ASVLQEAITY INFYQEQVKL LSTPYMKNSS  240
IKDPWGGWDR EDHNKMGPKH LDLRSRGLCL VPISCTPIAY RDNSATDYWS PSYRGSLYR*
Cis-element ? help Back to Top
SourceLink
PlantRegMap881438
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934880.0AB493488.1 Arabidopsis thaliana At1g31050 mRNA for hypothetical protein, partial cds, clone: RAAt1g31050.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020866434.10.0transcription factor bHLH111 isoform X2
SwissprotQ9FYJ60.0BH111_ARATH; Transcription factor bHLH111
TrEMBLD7KGI30.0D7KGI3_ARALL; Predicted protein
STRINGAl_scaffold_0001_32050.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80551923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.10.0bHLH family protein