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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 881355 | ||||||||
Common Name | ARALYDRAFT_680799 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 193aa MW: 22978.2 Da PI: 8.322 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 47 | 8.1e-15 | 7 | 119 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglk 103 lp+G+rF+ +d +l++++L+++v+++ ++ +vi++ diy+ eP +L++++++ rd+ y+ nr + g+Wk + k++++ +++ g k 881355 7 LPRGVRFSVKDIDLIDDFLRPHVNEEIIQD-NVIESKDIYEKEPGELEHRFNQ------TLLMRDRPYR-AVLDNR--NGGRWKYRET-KKIIR-RDRILGHK 97 799***********************9999.99**************855433......3567788775.466777..48****8765.66666.6889**** PP NAM 104 ktLvfykgrapkgektdWvmheyrl 128 +t f +++g+ t W heyrl 881355 98 ETVDFV---TNQGVTTGWRQHEYRL 119 *****9...788999********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-17 | 4 | 134 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 21.325 | 7 | 135 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-8 | 8 | 119 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MERQVPLPRG VRFSVKDIDL IDDFLRPHVN EEIIQDNVIE SKDIYEKEPG ELEHRFNQTL 60 LMRDRPYRAV LDNRNGGRWK YRETKKIIRR DRILGHKETV DFVTNQGVTT GWRQHEYRLA 120 SDDFQTKVLV HLYYDVAFDK TRQLPIPHEQ QRQPRRARQE GIVAPAICEN VVAERVEMDA 180 RPWYMKCFCC LI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 881355 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D7KFJ8 | 1e-140 | D7KFJ8_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0001_3122 | 1e-141 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17442 | 7 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17260.1 | 2e-10 | NAC domain containing protein 86 |
Link Out ? help Back to Top | |
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Phytozome | 881355 |
Entrez Gene | 9329685 |