PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 880939 | ||||||||
Common Name | ARALYDRAFT_680383 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 341aa MW: 38241.8 Da PI: 8.3053 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.8 | 2.1e-32 | 209 | 264 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs++AtPk+i++lmkv+gLt+++vkSHLQkYRl+ 880939 209 KQRRCWSPELHRRFLHALQQLGGSHVATPKQIRDLMKVDGLTNDEVKSHLQKYRLH 264 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.288 | 206 | 266 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-28 | 206 | 267 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.17E-18 | 207 | 267 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.2E-27 | 209 | 264 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.4E-7 | 211 | 262 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 341 aa Download sequence Send to blast |
MMMFKSGDME DHTQKMKRCH EYVEALEVEQ KKIQVFQREL PLCLELVTQA IESCRKELSE 60 SSEHVGGQSE CSERTTSECG GGGGVVFEEF IPIKWTSSSS DETDKDEEAE NNGGDKKKSD 120 WLRSVQLWNQ SPDPKPKEDH VINKKTNVIE VKRNAGAFQP FQKEKPKAAD SQPLKTITPT 180 STTTSSSTAE TVGGKSELED PKQSHSNRKQ RRCWSPELHR RFLHALQQLG GSHVATPKQI 240 RDLMKVDGLT NDEVKSHLQK YRLHTRRPAT PVITNAGENP QQRQFMVVEG IWVPSHDTTN 300 NRVYAPVAVQ SSPSGERSSR RCKSPTTSSS THTPHRLPLS * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00160 | DAP | Transfer from AT1G25550 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 880939 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY085913 | 0.0 | AY085913.1 Arabidopsis thaliana clone 1959 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002893418.1 | 0.0 | transcription factor HHO3 | ||||
Swissprot | Q9FPE8 | 0.0 | HHO3_ARATH; Transcription factor HHO3 | ||||
TrEMBL | D7KQU5 | 0.0 | D7KQU5_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0001_2706 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3491 | 28 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25550.1 | 1e-177 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 880939 |
Entrez Gene | 9326746 |
Publications ? help Back to Top | |||
---|---|---|---|
|