PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 880439
Common NameARALYDRAFT_679883
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 591aa    MW: 66715 Da    PI: 6.4495
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
880439genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS97.81.6e-301973063115
    GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIlea 105
             + L++cA+a+s+g++ela +++++l++++s +gdp qR+aay++e+Laar+a s++ ly+al+++e +   s+e+laa+++++ev+P++kf++l+aN aI ea
  880439 197 QILISCARALSEGKAELALSMVNELRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFLYRALKCKEPP---SDERLAAMQVLFEVCPCFKFGFLAANGAIIEA 296
             78*****************************************************************9...9******************************* PP

    GRAS 106 vegeervHii 115
             ++g++ +  i
  880439 297 IKGNQYMTLI 306
             ***9877555 PP
2GRAS219.22e-67342529183370
    GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
              ++++ +++++L +kpgE+l+Vn+++qlh+++desv++ ++rde+L++vksl+Pk+v+vveq++++n+++F+ rf+ea eyysa+f+sl+++lpres+er++v
  880439 342 PSKTSIVSPSTLGCKPGETLIVNFAFQLHHMPDESVTTVNQRDELLHMVKSLNPKLVTVVEQDVNTNTSPFFSRFIEAYEYYSAVFESLDMTLPRESQERMNV 444
             578899************************************************************************************************* PP

    GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
             Er++l+r+i n+vaceg+er+er e ++kWr+r+++aGF+p p+s k++++++ l+++ + + y+++ee g+l ++W++++L++ 
  880439 445 ERQCLARDIANIVACEGEERIERYEAAGKWRARMMMAGFNPRPMSAKVTNNIQNLIKQQYCNRYKLKEEMGELHFCWEEKSLIVR 529
             ************************************************************777*******************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.815169513IPR005202Transcription factor GRAS
PfamPF035145.6E-28197306IPR005202Transcription factor GRAS
PfamPF035147.0E-65342529IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MVEQTVAREH IKARVMSLVR PAEPSATSYR NPKLYSLNDN GNNNGVTSAQ IFDPDRSKNT  60
CLTDDSYPSQ SYEKYFLDSP PDEFVQHPIG SGASVQLIWL FGLVSVSAKT GSWMFHGISE  120
EFDDEQMRSK IQELERALLG DEDEKMVGID NLMEIDNEWS YQNESEQHHD SPKESSSADS  180
NSHVSSKEVV SQATPKQILI SCARALSEGK AELALSMVNE LRQIVSIQGD PSQRIAAYMV  240
EGLAARMAAS GKFLYRALKC KEPPSDERLA AMQVLFEVCP CFKFGFLAAN GAIIEAIKGN  300
QYMTLIRYVA ELPGKRPRLS PTLNRRVKNH WFKTGTTCRA VPSKTSIVSP STLGCKPGET  360
LIVNFAFQLH HMPDESVTTV NQRDELLHMV KSLNPKLVTV VEQDVNTNTS PFFSRFIEAY  420
EYYSAVFESL DMTLPRESQE RMNVERQCLA RDIANIVACE GEERIERYEA AGKWRARMMM  480
AGFNPRPMSA KVTNNIQNLI KQQYCNRYKL KEEMGELHFC WEEKSLIVRC FSLESGEAYM  540
MMEKTVAAIP QKSFLEFPWR AERETRATVA NTAKTQVKIP KIFAFSFFGA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-361975286370GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap880439
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0154470.0AC015447.8 Arabidopsis thaliana chromosome I BAC F24J8 genomic sequence, complete sequence.
GenBankAF0363000.0AF036300.1 Arabidopsis thaliana scarecrow-like 1 (SCL1) mRNA, partial cds.
GenBankAF2107310.0AF210731.1 Arabidopsis thaliana scarecrow-like 1 (SCL1) mRNA, complete cds.
GenBankAY0458330.0AY045833.1 Arabidopsis thaliana putative scarecrow 1 protein (At1g21450) mRNA, complete cds.
GenBankAY0844920.0AY084492.1 Arabidopsis thaliana clone 109490 mRNA, complete sequence.
GenBankAY0966260.0AY096626.1 Arabidopsis thaliana unknown protein (At1g21450) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_173566.10.0SCARECROW-like 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLD7KJY30.0D7KJY3_ARALL; Predicted protein
STRINGAl_scaffold_0001_22060.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69532744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]