PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 878856
Common NameARALYDRAFT_678300
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 329aa    MW: 36123.2 Da    PI: 5.2325
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
878856genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.34.3e-10141196560
             CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
             kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  ++     l 
  878856 141 KRAKRILANRQSAARSKERKARYIQELERKVQSLQTEATTLSAQLTLYQRDTNGLA 196
             9*****************************************99988877666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-15137201IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.829139202IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.25E-10141192No hitNo description
PfamPF001701.4E-8141195IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-7141186No hitNo description
CDDcd147036.52E-23142191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEKSDPPPPP PEPATIIPSD PIPSSSFHRR SRSDDMSMFM FMDPLSSGAP PSSDDLPSDD  60
DLFSSFIDVD SLTSNPNPFP NPSLSSNSVS GANPPPPSSR PRHRHSNSVD AGCAMYAGEI  120
MDAKKAMPPE KLSELWNIDP KRAKRILANR QSAARSKERK ARYIQELERK VQSLQTEATT  180
LSAQLTLYQR DTNGLANENT ELKLRLQAME QQAQLRNALN EALRKEVERM KMETGEISGN  240
SDSFDMGMQQ IQYSSSTFMA IPPYHGSMNV HDMQMHTSFN PMEMSNSQSV SEFLQNGRLQ  300
GLGISSNSSS LVKSEGPSLS ASESSSAY*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00129DAPTransfer from AT1G06850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap878856
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4198520.0AJ419852.1 Arabidopsis thaliana mRNA for AtbZIP transcription factor.
GenBankAY0624740.0AY062474.1 Arabidopsis thaliana Similar to bZIP transcription factors (At1g06850; F4H5.7) mRNA, complete cds.
GenBankBT0001020.0BT000102.1 Arabidopsis thaliana Similar to bZIP transcription factors (At1g06850) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889621.10.0transcription factor RF2b
SwissprotQ6S4P41e-80RF2B_ORYSJ; Transcription factor RF2b
TrEMBLD7KG720.0D7KG72_ARALL; Predicted protein
STRINGAl_scaffold_0001_6230.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135551727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06850.11e-143basic leucine-zipper 52
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dai S,Zhang Z,Bick J,Beachy RN
    Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
    J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
    [PMID:16476995]
  3. Liu Y,Dai S,Beachy RN
    Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem. J., 2007. 405(2): p. 243-9
    [PMID:17371296]
  4. Dai S, et al.
    Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
    [PMID:19104064]