PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 878370
Common NameARALYDRAFT_677814
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 361aa    MW: 41289.8 Da    PI: 5.4714
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
878370genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM138.15.7e-4341322128
     NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgel 99 
             p+GfrF+Ptdee+v++yL++k  +++  +++evi++vdi++++PwdLp k ++k+++  wyfFs ++ ky++g++++r t+sg+Wk+tgk+ ++++k  ++e+
  878370   4 PVGFRFRPTDEEIVDHYLRPKNLDSDtSHVDEVISTVDICDSDPWDLPsKsMIKSSDGVWYFFSLKEMKYNRGDQQRRRTNSGFWKKTGKTLTIMRKrgNREK 106
             89******************9777664777889**************96347777888**************************************9877888 PP

     NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
             +g k++Lvf    +++++ktdWvmhey++
  878370 107 IGEKRVLVFK---NRDSSKTDWVMHEYHA 132
             *********7...445569********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.26E-453151IPR003441NAC domain
PROSITE profilePS5100544.3533151IPR003441NAC domain
PfamPF023658.7E-254131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MVNPVGFRFR PTDEEIVDHY LRPKNLDSDT SHVDEVISTV DICDSDPWDL PSKSMIKSSD  60
GVWYFFSLKE MKYNRGDQQR RRTNSGFWKK TGKTLTIMRK RGNREKIGEK RVLVFKNRDS  120
SKTDWVMHEY HATSLFPNQV MTYTICKVEF KGEETEISSS STGSEIEQIH SLIPLVNNSG  180
GSEGSSYSQE LQNPSQFSGF SDVHQEAQLD DATTSTEEWK TWLNDDGDEQ MNYIVNMQDD  240
RNDHRPQKPL TGVFIDYSSD DNDSDLLSPN TNFIETWSSC DSFASSNHRI DQIKTQQSPD  300
STIKLVTLTQ EVSQALGQGI EIGEHKLGQE TVRKKRASFI YRMIQRLVKK MQLCSSISRT  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-23413118141NO APICAL MERISTEM PROTEIN
1ut4_B2e-23413118141NO APICAL MERISTEM PROTEIN
1ut7_A2e-23413118141NO APICAL MERISTEM PROTEIN
1ut7_B2e-23413118141NO APICAL MERISTEM PROTEIN
3swm_A3e-23413121144NAC domain-containing protein 19
3swm_B3e-23413121144NAC domain-containing protein 19
3swm_C3e-23413121144NAC domain-containing protein 19
3swm_D3e-23413121144NAC domain-containing protein 19
3swp_A3e-23413121144NAC domain-containing protein 19
3swp_B3e-23413121144NAC domain-containing protein 19
3swp_C3e-23413121144NAC domain-containing protein 19
3swp_D3e-23413121144NAC domain-containing protein 19
4dul_A2e-23413118141NAC domain-containing protein 19
4dul_B2e-23413118141NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00122DAPTransfer from AT1G02230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap878370
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934240.0AB493424.1 Arabidopsis thaliana At1g02240 mRNA for hypothetical protein, partial cds, clone: RAAt1g02240.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002892093.10.0NAC domain-containing protein 4
SwissprotO819130.0NAC4_ARATH; NAC domain-containing protein 4
TrEMBLD7KB640.0D7KB64_ARALL; Predicted protein
STRINGAl_scaffold_0001_1370.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23151676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02230.10.0NAC domain containing protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]