PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 878307 | ||||||||
Common Name | ARALYDRAFT_677751 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 248aa MW: 28423.1 Da PI: 9.0637 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 78.1 | 6.3e-25 | 17 | 62 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 n+sn qvtfskRr g++KKA+EL++LCdae+a+i+fs++gk+y + 878307 17 TNESNLQVTFSKRRSGLFKKASELCTLCDAEIAIIVFSPSGKVYSF 62 699*****************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.1E-36 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.871 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.17E-34 | 7 | 74 | No hit | No description |
SuperFamily | SSF55455 | 3.92E-28 | 7 | 89 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.9E-22 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.2E-26 | 16 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.9E-22 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.9E-22 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MARKNLGRRK IEIVKMTNES NLQVTFSKRR SGLFKKASEL CTLCDAEIAI IVFSPSGKVY 60 SFGHPNVNVL LDQFSERVLR QNNTNLDESH TKLHIQMLNE SLTEAMAEKE KEQRKKEWLV 120 QNEREIKNVE EWWTNSLKEL NLTQLTSMKH ALEDLKKEVN ERASLFHQSN SNFYVGSSSN 180 AAAPEAVNGG NISINQGFFT QNGMPTHVQT LPFGFNVMNR TPTGYNNCQI QNQEFKQVHP 240 YYGPRYY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 5e-17 | 6 | 76 | 1 | 71 | MEF2 CHIMERA |
6byy_B | 5e-17 | 6 | 76 | 1 | 71 | MEF2 CHIMERA |
6byy_C | 5e-17 | 6 | 76 | 1 | 71 | MEF2 CHIMERA |
6byy_D | 5e-17 | 6 | 76 | 1 | 71 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function as a floral promoter operating upstream of known floral activators in the autonomous pathway. {ECO:0000269|PubMed:16899218}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 878307 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002889362.1 | 0.0 | agamous-like MADS-box protein AGL28 | ||||
Swissprot | Q9LMM8 | 1e-132 | AGL28_ARATH; Agamous-like MADS-box protein AGL28 | ||||
TrEMBL | D7KQ65 | 0.0 | D7KQ65_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0001_74 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17507 | 7 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01530.1 | 1e-135 | AGAMOUS-like 28 |
Link Out ? help Back to Top | |
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Phytozome | 878307 |
Entrez Gene | 9328123 |
Publications ? help Back to Top | |||
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