PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 877021
Common NameARALYDRAFT_676465
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MIKC_MADS
Protein Properties Length: 347aa    MW: 39550.2 Da    PI: 8.3489
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
877021genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.32.7e-201153345
            --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
  SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
             +n   rq t++kRr+gi+KKA+ELS+LCd++v +++fs+ gk
  877021 11 LQNMNGRQCTYAKRRHGIMKKAKELSILCDIDVVLLMFSPMGK 53
            568888**********************************997 PP
2K-box16.63.2e-071161802381
   K-box  23 kLkkeienLq.....reqRhllGedLesL.slkeLqqLeqqLekslkkiRskKnellleqieelq 81 
              L ++i+ Lq        R   + d+e++ s+ +LqqLe+ L +sl +i  +K  + + q ++l 
  877021 116 VLSEKIRFLQtqlsdIHTRLSYWTDVENIdSVDDLQQLEHSLRQSLAQIYGRKASMPRHQHRQLM 180
             466666666655544445777888888885689********************999888777654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.904153IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-27160IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.11E-24292IPR002100Transcription factor, MADS-box
CDDcd002661.91E-22281No hitNo description
PRINTSPR004042.8E-16323IPR002100Transcription factor, MADS-box
PfamPF003191.8E-161254IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-163859IPR002100Transcription factor, MADS-box
PROSITE profilePS512976.922107206IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGRVKLKIKK LQNMNGRQCT YAKRRHGIMK KAKELSILCD IDVVLLMFSP MGKASVCIGK  60
HSIGEVIAKF AQLSPQERAK RKLENLEALR KIFMKVNHDI DISKFLDRSS TPTVEVLSEK  120
IRFLQTQLSD IHTRLSYWTD VENIDSVDDL QQLEHSLRQS LAQIYGRKAS MPRHQHRQLM  180
SSKCKNQLQT EIDIDFGMEM EQQLENFSWV RTDENMNVPP KEEDPNMQLH QMYRDIKCSA  240
SSSLGNYSGL FFSKSSDLST PKLQTGSIPG TAADPNQQIS NLSFLNDQKL QQLAEWNLLG  300
SPADYYVSQI LEASYKPQFG GKNNCASSET LPYVAVFDDP LYFWPN*
Cis-element ? help Back to Top
SourceLink
PlantRegMap877021
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1150130.0AB115013.1 Arabidopsis thaliana At1g69540 mRNA for MADS-box protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889921.10.0agamous-like MADS-box protein AGL30
TrEMBLD7KXG60.0D7KXG6_ARALL; Predicted protein
STRINGAl_scaffold_0002_16150.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149561620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69540.10.0AGAMOUS-like 94