PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 876849
Common NameARALYDRAFT_676293
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 361aa    MW: 41033.2 Da    PI: 8.207
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
876849genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-30220279159
             ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
             ++Dg++WrKYGqK+ kg+++pr+YYrCt   gCpv+k+v+r+ ed +++++tYeg+Hnh+
  876849 220 MNDGCQWRKYGQKTAKGNPCPRAYYRCTVVlGCPVRKQVQRCLEDMSILITTYEGTHNHP 279
             58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-32205281IPR003657WRKY domain
SuperFamilySSF1182909.29E-28213281IPR003657WRKY domain
PROSITE profilePS5081128.667215281IPR003657WRKY domain
SMARTSM007741.8E-36220280IPR003657WRKY domain
PfamPF031069.0E-27221279IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MTKIEVRFAS PLMGIDLSLK LEAKEKKKEI EGSKHSRENK EDEEHDASGD KDEQMVKEAE  60
DDSCLGSRTR EEENEREELL QLQIQMESVK EENTRLRKLV EQTLEDYRHL EMKFPVIDKT  120
KKMDLEMFLG VQGKRCVDIK SKVQKRGGER SPSMEREIGL SLSLQKKQKQ EESKEAVQSH  180
HNQRYNISSF DTNAPRIISS SQGNRKARVS VRARCETATM NDGCQWRKYG QKTAKGNPCP  240
RAYYRCTVVL GCPVRKQVQR CLEDMSILIT TYEGTHNHPL PVGATALAST ASTSPFLLLD  300
SSDNLSHPSY YQTPPVIDSS LITYPQNSST NNRTIRSLNF DGPSRGDHVS SSQNRLNWMM  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21207283176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap876849
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935250.0AB493525.1 Arabidopsis thaliana At1g68150 mRNA for hypothetical protein, partial cds, clone: RAAt1g68150.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020891773.10.0LOW QUALITY PROTEIN: probable WRKY transcription factor 9
SwissprotQ9C9F00.0WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLD7KVR40.0D7KVR4_ARALL; Predicted protein
STRINGAl_scaffold_0002_14430.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67362741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.10.0WRKY DNA-binding protein 9