PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 876639
Common NameARALYDRAFT_676083
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 242aa    MW: 27342.7 Da    PI: 5.8861
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
876639genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.24.5e-20102162259
             --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
             dDg++WrKYGqK++k s++ r+ Y C++a   +C++kk+v+  ++ p v  +tY g+H ++
  876639 102 DDGFTWRKYGQKTIKTSPHQRALYICAYAkdqNCNAKKRVQMIQDSPPVYRTTYVGKHVCK 162
             8***************************98999*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-2296162IPR003657WRKY domain
SuperFamilySSF1182907.72E-2199162IPR003657WRKY domain
SMARTSM007741.1E-26101163IPR003657WRKY domain
PfamPF031063.1E-21102162IPR003657WRKY domain
PROSITE profilePS5081118.223102159IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MSSNIAQKAV AVLLRGQGCA NSLKTLLQNN KSSSVSTEQL INTILNSFSL ALSFVDSPNH  60
LPHNESSLQN MTSHVPQRPS KKKNYGAEGL VFYRDESPTP RDDGFTWRKY GQKTIKTSPH  120
QRALYICAYA KDQNCNAKKR VQMIQDSPPV YRTTYVGKHV CKDFAVHDDT YGSEMIKFDQ  180
VVSKSVMPQL ATIEEQEITM EDEATDHIMN QEGDINDFLV DDDQFWATQF PPFSLEDLMF  240
F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-15102162969OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap876639
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0718500.0AY071850.1 Arabidopsis thaliana WRKY transcription factor 64 (WRKY64) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020891616.10.0LOW QUALITY PROTEIN: probable WRKY transcription factor 64
SwissprotQ9C5571e-146WRK64_ARATH; Probable WRKY transcription factor 64
TrEMBLD7KTR70.0D7KTR7_ARALL; Predicted protein
STRINGAl_scaffold_0002_12330.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56091847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66560.11e-148WRKY DNA-binding protein 64