PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 876543
Common NameARALYDRAFT_675987
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 633aa    MW: 71646.5 Da    PI: 6.8203
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
876543genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.81.4e-5561341129
     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101
             +ppGfrFhPtdeelv +yLk+k++g+++el e+i+e+d+yk+ePwdLp k  + +++ ew+fFs+rd+ky++g+r+nratk+gyWkatgkd++v+s +++ vg
  876543   6 MPPGFRFHPTDEELVIYYLKRKINGRTIEL-EIIPEIDLYKCEPWDLPgKsLLPSKDLEWFFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVTS-HSRMVG 106
             79****************************.99***************6434555777**************************************.999*** PP

     NAM 102 lkktLvfykgrapkgektdWvmheyrle 129
             +kktLv+y+grap+g++tdWvmheyrle
  876543 107 TKKTLVYYRGRAPHGSRTDWVMHEYRLE 134
             **************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-644156IPR003441NAC domain
PROSITE profilePS5100561.1156156IPR003441NAC domain
PfamPF023652.5E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MAPVSMPPGF RFHPTDEELV IYYLKRKING RTIELEIIPE IDLYKCEPWD LPGKSLLPSK  60
DLEWFFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVTS HSRMVGTKKT LVYYRGRAPH  120
GSRTDWVMHE YRLEEQECDS KSGIQDAYAL CRVFKKSALA NKIEEQHHGT KKNKATTNSE  180
QSTSSTCLYS DGMYENLENS GYPVSPGTGG LTQLGNNSSS DMETIENKWS QFMSHDTSFN  240
FPPQSQYGTI SYPPSKVDIA LECARLQNRM LPPVPPLYVE GLTHSEYLGN NVANDTDEML  300
SKIIALAQAS HEPRNSLDSW DGGSASGNFH GDFNYSGEKV SCIEANAKAV DMQEHYGSFK  360
EERLVENLRW VGVSSKELEK SFVEEHSTVV PIEDIWSYHR DNQEQEHQDQ DGMDVNNNNG  420
DVDDAFTLEF SENDHNENIL DKNDHDTTSS SCFEVIKKVE VSHGLFVTTR QVTNTFFQKI  480
VPSQTVIVYI NPTGANECCH NMTSKEEVPV RKKINPQLNG VGSTFLVPWR KFVYVIGFNP  540
MLLLMRCVHQ GGNSNKNRSS ECYSRQPKKG NCNNLGTILM MENAVVRRKF SKKKKEKNMV  600
DEQGFRFQDS FVLKKLGLSL AIILAVSTIS LI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-57116212171NO APICAL MERISTEM PROTEIN
1ut4_B9e-57116212171NO APICAL MERISTEM PROTEIN
1ut7_A9e-57116212171NO APICAL MERISTEM PROTEIN
1ut7_B9e-57116212171NO APICAL MERISTEM PROTEIN
4dul_A9e-57116212171NAC domain-containing protein 19
4dul_B9e-57116212171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap876543
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF12P190.0AC009513.2 Sequence of BAC F12P19 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002888465.10.0NAC domain-containing protein 86
TrEMBLD7KT140.0D7KT14_ARALL; Predicted protein
STRINGAl_scaffold_0002_11370.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101122632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.10.0NAC domain containing protein 28