PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 875616
Common NameARALYDRAFT_675060
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 249aa    MW: 26539 Da    PI: 6.7754
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
875616genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.51.2e-1688137155
     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
             + y+G+r ++ +g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  875616  88 PVYRGIR-CR-SGKWVSEIREPKK---TTRVWLGTYTTPEMAAAAYDVAALALKG 137
             68****9.55.6*********854...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-988137IPR001471AP2/ERF domain
SMARTSM003807.2E-2789153IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-1889147IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-2689147IPR001471AP2/ERF domain
PROSITE profilePS5103219.61289145IPR001471AP2/ERF domain
CDDcd000185.20E-1690147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MKMKMKLVDP NPEHQRRKRI SDKSGKHKDD LAYVKSSLSD SVTCENPYPL DTITPTVSFA  60
APTSTTSGND INTLMATDAD ISRRKKRPVY RGIRCRSGKW VSEIREPKKT TRVWLGTYTT  120
PEMAAAAYDV AALALKGGDT VLNFPDSVGS YPSPLSSSAA HIRCAAAAAA AARGAAAAAV  180
KGGEKKEEEV CDTAGSSTMG FVDEEELLNM PGLLADMAKG MMVAPPWMGS PPSDDSPENS  240
DGESLWSY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap875616
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0107950.0AC010795.5 Arabidopsis thaliana chromosome 1 BAC F16M19 genomic sequence, complete sequence.
GenBankAY5608420.0AY560842.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g63040) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020865977.11e-154LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF026
RefseqXP_020871991.11e-154LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF026
SwissprotQ9CAN91e-106ERF26_ARATH; Ethylene-responsive transcription factor ERF026
TrEMBLD7KU330.0D7KU33_ARALL; Predicted protein
STRINGAl_scaffold_0002_2100.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.15e-26ERF family protein