PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 874313
Common NameARALYDRAFT_673757
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 477aa    MW: 52832.8 Da    PI: 7.8938
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
874313genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.3e-30109167160
             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
             ++DgynWrKYGqK vkg+ef rsYYrCt+++C++kk++ers+  ++vv+++Y geH+h+k
  874313 109 MEDGYNWRKYGQKLVKGNEFVRSYYRCTHPNCKAKKQLERSS-GGQVVDTVYFGEHDHPK 167
             58****************************************.***************85 PP
2WRKY105.72.4e-33295353159
             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
             ++Dgy+WrKYGqK+vkgs++prsYYrC+s+gCpvkk+vers++d+k++++tYeg+H+h+
  874313 295 VNDGYRWRKYGQKSVKGSPYPRSYYRCSSSGCPVKKHVERSSHDTKLLITTYEGKHDHD 353
             58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.745104168IPR003657WRKY domain
SuperFamilySSF1182909.55E-25105168IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-26106168IPR003657WRKY domain
SMARTSM007746.9E-35109167IPR003657WRKY domain
PfamPF031067.4E-24110166IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-34281355IPR003657WRKY domain
SuperFamilySSF1182901.44E-28289355IPR003657WRKY domain
PROSITE profilePS5081134.991290355IPR003657WRKY domain
SMARTSM007741.3E-38295354IPR003657WRKY domain
PfamPF031063.0E-26296352IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MAEVGKVPAS DMELAYSSET KAADDVAATD KVEVTPVTVT ITDTVVESSK STDCKELQQL  60
VPHTVASLSE VDVASPTSEK APKISESSTA LSLQSGSEGN SPFIREKVME DGYNWRKYGQ  120
KLVKGNEFVR SYYRCTHPNC KAKKQLERSS GGQVVDTVYF GEHDHPKPLT GAVFINQDKR  180
SDVFMACSVT YQLFTVSYGI MFVEKSSGSS VQAHRQTEPP KIHGGLHVTV IPPAEDAKTD  240
ISQSSRIKGD NTHKDYNSPT SKRRKKGGNI ELSPVERSTN DSRIVVHTQT LFDIVNDGYR  300
WRKYGQKSVK GSPYPRSYYR CSSSGCPVKK HVERSSHDTK LLITTYEGKH DHDMPPGRVV  360
THNNMLDSEV DDKEGDANKT PQSSALQSIT KDQHVEDHPR KKTKTNGFEK SLDQGPVLDE  420
KLKEKIKERS DVNKDQAANH AKSETKSDDK TTACHEKAVV TLENEEQKPK TEPARS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-49108357176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap874313
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4423890.0AF442389.1 Arabidopsis thaliana WRKY transcription factor 1 splice variant 1 (WRKY1) mRNA, complete cds; alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020886221.10.0WRKY transcription factor 1
SwissprotQ9SI370.0WRKY1_ARATH; WRKY transcription factor 1
TrEMBLD7L8J90.0D7L8J9_ARALL; Predicted protein
STRINGAl_scaffold_0003_29540.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79492639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.10.0zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]