PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

GATA

Protein Properties

Length: 214aa MW: 23511.4 Da PI: 8.3645

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
873583	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	58.5	8.8e-19	164	200	1	35
GATA 1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ nC++ +Tp+WRrgp g+k+LCnaCG+++rk+++ 873583 164 CTnmNCNALNTPMWRRGPLGPKSLCNACGIKFRKEEE 200 55559*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	2.9E-10	160	209	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	2.0E-16	164	200	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	3.14E-10	167	200	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.7E-12	167	200	IPR013088	Zinc finger, NHR/GATA-type
PROSITE profile	PS50114	11.358	168	196	IPR000679	Zinc finger, GATA-type
CDD	cd00202	4.03E-10	168	197	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MEQELDLTLK LGLPNSTVDT HLSLNLSTTT TNQGDNNNDG GEVLNYRRAL WGNDEVIHNE 60 AARNNVEFNI RIYNYVFQQL AGAPNTLNFA PYPMPSPAPA PAPAPAPETP PASDEYVLID 120 VPARRVRRNN SQTMANTWNE NATAKRLRGC GGSCGGRIEG MKKCTNMNCN ALNTPMWRRG 180 PLGPKSLCNA CGIKFRKEEE RKAKRNGVIE LDN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	873583

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493625	0.0	AB493625.1 Arabidopsis thaliana At3g20750 mRNA for hypothetical protein, partial cds, clone: RAAt3g20750.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020886305.1	1e-122	GATA transcription factor 29
Swissprot	Q9LT45	3e-94	GAT29_ARATH; GATA transcription factor 29
TrEMBL	D7KZW1	1e-156	D7KZW1_ARALL; Predicted protein
STRING	Al_scaffold_0003_2224	1e-156	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10652	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20750.1	8e-82	GATA transcription factor 29

Link Out ? help Back to Top
Phytozome	873583
Entrez Gene	9321468

Publications ? help Back to Top
Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain. Plant Physiol., 2014. 166(1): p. 293-305 [PMID:25077795]