PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 873042
Common NameARALYDRAFT_672486
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family CPP
Protein Properties Length: 422aa    MW: 47135.2 Da    PI: 6.1819
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
873042genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR47.82.9e-1563100341
     TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
             +k+C+Ck+skClk+YC+Cfa+g+ C++ C C dC+N+++
  873042  63 RKRCRCKQSKCLKLYCDCFASGVLCTD-CDCVDCHNNSD 100
             589************************.********987 PP
2TCR50.44.3e-16146183441
     TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
             +gC+Ck++kClkkYCeCf+a++ Cs++CkC +CkN +e
  873042 146 RGCKCKRTKCLKKYCECFQANVLCSDNCKCINCKNVSE 183
             79*********************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011146.2E-1661101IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163430.11862183IPR005172CRC domain
PfamPF036385.1E-126498IPR005172CRC domain
SMARTSM011141.4E-17143184IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-12146181IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MTGNADSGKI ATEKDPRKIV FTKLELSPVF LESPVKEIPP FPPISREHSE TKDTTDQEGI  60
TWRKRCRCKQ SKCLKLYCDC FASGVLCTDC DCVDCHNNSD NYDARDAAVV NVLGRNPNAF  120
NEKLFSSIND KQCKAAPDTR PGLLSRGCKC KRTKCLKKYC ECFQANVLCS DNCKCINCKN  180
VSEAFQPSVF AWGLNSRKLY EGFDNPEKKF VCDLGIISPS EDSVGFNSHN TAGCMNYAPG  240
FSAHNSPQVY RRRRHQELPE WNSCPAPLFS IPDNSIQNAL GSPMSSSPKL PYRKKKPPLG  300
YASTVVPDLG DICSLLLAAS ETATANAEDQ NRICIKPDDK VDNVYTEVLS ESESGNVEEE  360
IQSFRRLIEL IDAQYNGEEH SKCKTETSVH ETDIYMEQER AVLETFRDCL QTFIKSRLDS  420
I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-196318411124Protein lin-54 homolog
5fd3_B2e-196318411124Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap873042
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6530890.0DQ653089.1 Arabidopsis thaliana clone 0000013135_0000009456 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002885126.10.0protein tesmin/TSO1-like CXC 8 isoform X2
SwissprotQ700D00.0TCX8_ARATH; Protein tesmin/TSO1-like CXC 8
TrEMBLD7L5L00.0D7L5L0_ARALL; Predicted protein
STRINGAl_scaffold_0003_16830.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148441520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16160.10.0Tesmin/TSO1-like CXC domain-containing protein