PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 870409
Common NameARALYDRAFT_669853
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 383aa    MW: 42513.9 Da    PI: 6.7054
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
870409genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.7e-165398147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++e de l ++vk+ G+++W++ +r ++ gR++k+c++rw + 
           870409 53 KGSWSPEQDEALTRLVKKCGPRNWTLMSRGIP-GRSGKSCRLRWCNQ 98
                     799*****************************.***********985 PP
2Myb_DNA-binding47.63.8e-15105148146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r++++ eEd  +  a++ lG++ W+ Ia+ ++ gRt++ +k++w++
           870409 105 RKPFSDEEDHMIMSAHAVLGNK-WAVIAKLLP-GRTDNAIKNHWNS 148
                      789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.8544899IPR017930Myb domain
SuperFamilySSF466896.36E-2950146IPR009057Homeodomain-like
SMARTSM007175.3E-1452101IPR001005SANT/Myb domain
PfamPF002499.1E-155398IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2254106IPR009057Homeodomain-like
CDDcd001675.21E-135597No hitNo description
PROSITE profilePS5129424.091100154IPR017930Myb domain
SMARTSM007171.4E-12104152IPR001005SANT/Myb domain
PfamPF002491.3E-13105148IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-23107153IPR009057Homeodomain-like
CDDcd001677.31E-9107150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MNSEISQPPE LMPSLNPFSG VDISEDTINA AVEAELAELA KSDSNGGGKS KVKGSWSPEQ  60
DEALTRLVKK CGPRNWTLMS RGIPGRSGKS CRLRWCNQLD PNLKRKPFSD EEDHMIMSAH  120
AVLGNKWAVI AKLLPGRTDN AIKNHWNSSL RRKPADLWKV PLLMSYTEEI YQMHPSKVRK  180
ISNASTKEEH LPREETDLVT PPVLNDEANE PPREQKSKPD IYRPVARIGA FSVCKPGYMN  240
DHMAPCEGSL VQASRSDSLA GKFLQSLCYD PIIPSKCGHG CCNHQDNKTM SSSCNSVLGP  300
EFVDYEERSS AELDQELISI STDLNNIAWT RSGINNNYFK EAEPSLKADD QFGREYAQAK  360
FTGMVNNGVS SQMLRQDLRA LS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-37521536107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap870409
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935820.0AB493582.1 Arabidopsis thaliana At2g39880 mRNA for hypothetical protein, partial cds, clone: RAAt2g39880.
GenBankAF1759880.0AF175988.1 Arabidopsis thaliana putative transcription factor (MYB25) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002881682.10.0transcription factor MYB25 isoform X1
SwissprotO041920.0MYB25_ARATH; Transcription factor MYB25
TrEMBLD7LDT70.0D7LDT7_ARALL; Predicted protein
STRINGAl_scaffold_0004_25720.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56382747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39880.10.0myb domain protein 25
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]