PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 870219
Common NameARALYDRAFT_669663
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 292aa    MW: 34652 Da    PI: 7.0774
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
870219genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.42.9e-2642124186
  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
               +W+ +e+++Li +r e+++++ ++k++k lWe +s+kmr++ f rsp+qCk+kw+nl +r+k ++++e +    +++++p++d+++
    870219  42 QWSVEETKELIGIRGELDQTFMETKRNKLLWEVISNKMRDKSFPRSPEQCKCKWKNLVTRFKGCETMEAET---ARQQFPFYDDMQ 124
               7********************************************************************84...56679*****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.004839101IPR001005SANT/Myb domain
CDDcd122039.45E-2341106No hitNo description
PfamPF138371.4E-2042124No hitNo description
PROSITE profilePS500907.6314399IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDGHQHHHLH QLQYLNKHHL HHPQSQTPEI ASPVAVGDRF PQWSVEETKE LIGIRGELDQ  60
TFMETKRNKL LWEVISNKMR DKSFPRSPEQ CKCKWKNLVT RFKGCETMEA ETARQQFPFY  120
DDMQIIFTTR MQRMLWAESE GGGGGTSGTA RKREYSSEED QEENVNEELL DVSNDPKILN  180
PKKNIAKKRK GGSNSSSINI GVREVLEEFM RHQVRMESEW REVWEAREKE RAEKEEEWRR  240
KMEELEKERL AMERMWRDRE EQRRSREEMR AEKRDSLINA LLAKLTRDGS L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A4e-1339120384DNA binding protein GT-1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180189PKKNIAKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap870219
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4535820.0AF453582.1 Arabidopsis thaliana GT-1 like transcription factor (GT1L) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002879733.10.0trihelix transcription factor GT-3b
SwissprotO804501e-142TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLD7LLG40.0D7LLG4_ARALL; Predicted protein
STRINGAl_scaffold_0004_23820.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22152870
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.11e-105Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]