PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

MYB

Protein Properties

Length: 251aa MW: 28912.3 Da PI: 5.9194

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
869410	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.7	1.3e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l+++++++G +W++ +++ g+ R++k+c++rw +yl 869410 14 RGPWTPEEDQILINYIHLYGHSNWRALPKHAGLLRCGKSCRLRWINYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	52.1	1.6e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l 869410 67 RGNFTPQEEQTIINLHESLGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 112 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.7E-26	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.783	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	7.91E-31	10	108	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.2E-17	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	8.05E-12	16	61	No hit	No description
PROSITE profile	PS51294	25.085	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.3E-27	65	116	IPR009057	Homeodomain-like
SMART	SM00717	3.2E-14	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.6E-15	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	1.13E-9	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009733	Biological Process	response to auxin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MGRAPCCEKM GMKRGPWTPE EDQILINYIH LYGHSNWRAL PKHAGLLRCG KSCRLRWINY 60 LRPDIKRGNF TPQEEQTIIN LHESLGNRWS AIAAKLPGRT DNEIKNVWHT HLKKRISKNI 120 QNNGGDTKDI NGINETAHVD KESVIVDTAS LQQFSSSITT FDISNDSKDD VMSYEDISAL 180 IDDSFWSDVV SVDNFNSNEK KIEDWEGLID KKGKKCSYNN SKLYNDDMEF WFEVFTSNRR 240 IEEFSDIPEF *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-27	12	116	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269\|PubMed:24415840}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	869410

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:24415840}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY519575	0.0	AY519575.1 Arabidopsis thaliana MYB transcription factor (At2g31180) mRNA, complete cds.
GenBank	BT024853	0.0	BT024853.1 Arabidopsis thaliana At2g31180 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002881162.1	0.0	transcription factor MYB14
Swissprot	Q9SJX8	1e-174	MYB14_ARATH; Transcription factor MYB14
TrEMBL	D7LD00	0.0	D7LD00_ARALL; Predicted protein
STRING	Al_scaffold_0004_1573	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	1e-165	myb domain protein 14

Link Out ? help Back to Top
Phytozome	869410
Entrez Gene	9317229

Publications ? help Back to Top
Chen Y, et al. AtMYB14 Regulates Cold Tolerance in Arabidopsis. Plant Mol. Biol. Rep., 2013. 31: p. 87-97 [PMID:24415840]