PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 868325
Common NameARALYDRAFT_667769
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 778aa    MW: 86968.5 Da    PI: 9.8533
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
868325genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.81.4e-111292001590
             -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
      B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
             +  lp +f++e+g+++++   +tl   +g + e +l  r + g + l+kGWkeF+ +ngL++g+ ++++ +  +++
  868325 129 QRNLPLSFTRENGLDEPG--IITLVGNDGTKLEANL-LRENTGIMCLGKGWKEFAMSNGLRSGELFTLEAIL-ENG 200
             5679***********766..8***************.577777799**********************9664.444 PP
2B359.94.5e-19264355699
             ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
      B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
              ++   + ++l+lp + ++ +g++  + ++++++de+ rsW ++l+++k+s+++++++GW++F+++n+ k+g ++vF+l+g +++++v++++++
  868325 264 FTPEDIRDCILYLPQDLTALIGLER-KCREIVVTDERERSWALELKFNKSSDTFYISRGWRSFCDENDKKAGGVFVFRLVG-NRETPVLSFCST 355
             457778899*********9999885.667***************************************************9.666699999986 PP
3B3474.7e-15388472189
             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
             f++  +++d+l++g   lp +fa+++g++k++   +tl d++g + + +l+ r k g+++l+kGWk+Fv angLk+  +++++ +  ++
  868325 388 FVTLSLSHDNLRTGTRHLPLSFARDNGLDKPG--IITLVDKDGTKRKANLR-REKTGKMFLGKGWKDFVIANGLKSSKSFTLEAVL-EN 472
             667778899********************776..8***************4.55555689**********************9654.33 PP
4B348.71.4e-15534627198
             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
             f++  +++d+l++gr +lp +f++e+g+++++   +tl +++g + e  l  r ++g + l+kGWkeF+ +ngLk+g+ ++++ +  +++++++++++
  868325 534 FVTLSLSHDSLRKGRQYLPLSFTRENGLDEPG--IITLVSKDGTKLEASL-LRENKGIMCLGKGWKEFAIENGLKTGELFTLEAIL-EKGTPMLSLLS 627
             66777899*********************766..8***************.677778899***********************776.78889888876 PP
5B358.11.7e-18684773498
             E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
      B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
             +ltp+dv++ + l+lp +f++++g++k +  ++tl  ++  +W  +l    k g + l++GWk+F++ang+k+g+++++++++++++++v+k+ +
  868325 684 TLTPEDVSA-CKLILPSQFMKANGINKLG--KITLVGQNRTKWFAYL--LSKNGIVALGSGWKGFCEANGVKTGESFTLEYIDEQDTTPVFKFWS 773
             567777776.56************99766..8***************..888889***************************99***9**99866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.602153IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-5641IPR015300DNA-binding pseudobarrel domain
CDDcd100172.11E-6751No hitNo description
SuperFamilySSF1019362.16E-6747IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-11100198IPR015300DNA-binding pseudobarrel domain
CDDcd100173.57E-10103206No hitNo description
SMARTSM010197.5E-14104210IPR003340B3 DNA binding domain
PROSITE profilePS5086310.997115210IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-12122207IPR015300DNA-binding pseudobarrel domain
PfamPF023629.6E-10126204IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-18254355IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.86259355IPR003340B3 DNA binding domain
CDDcd100171.31E-16261354No hitNo description
SMARTSM010195.6E-26261356IPR003340B3 DNA binding domain
SuperFamilySSF1019368.83E-20261355IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-16264355IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-15381475IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-17384479IPR015300DNA-binding pseudobarrel domain
CDDcd100176.70E-14387459No hitNo description
PROSITE profilePS5086312.788388483IPR003340B3 DNA binding domain
SMARTSM010192.5E-22388483IPR003340B3 DNA binding domain
PfamPF023621.5E-14388475IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.2E-14524630IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-16530628IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.788534629IPR003340B3 DNA binding domain
SMARTSM010191.1E-24534629IPR003340B3 DNA binding domain
PfamPF023626.2E-15534627IPR003340B3 DNA binding domain
CDDcd100174.85E-14534627No hitNo description
Gene3DG3DSA:2.40.330.102.2E-19669774IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-20677775IPR015300DNA-binding pseudobarrel domain
CDDcd100176.06E-17679771No hitNo description
PROSITE profilePS5086312.802680775IPR003340B3 DNA binding domain
SMARTSM010191.2E-24680775IPR003340B3 DNA binding domain
PfamPF023621.1E-17682773IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MEASLLRRNT GGMCLGKGWK EFAMSNGLKS GESFTLEAIL ENGTPMLGLF STQSRSDRSQ  60
QGEYSKHSEK ESIFVEHSSG KETRKAIINR DVRRDSYPAS RNPFVTLRLT YDNLRNSRRV  120
SSSINPLIQR NLPLSFTREN GLDEPGIITL VGNDGTKLEA NLLRENTGIM CLGKGWKEFA  180
MSNGLRSGEL FTLEAILENG IPMLSLVSTQ STRYRSQEGE CAKDSEKESI STVPSKGNKK  240
RKATSKREEK RDSSSASQNR FVTFTPEDIR DCILYLPQDL TALIGLERKC REIVVTDERE  300
RSWALELKFN KSSDTFYISR GWRSFCDEND KKAGGVFVFR LVGNRETPVL SFCSTESIKN  360
NKENCMELER KKKHLKCIDS TSPSQNRFVT LSLSHDNLRT GTRHLPLSFA RDNGLDKPGI  420
ITLVDKDGTK RKANLRREKT GKMFLGKGWK DFVIANGLKS SKSFTLEAVL ENGTHMLSLV  480
SIQSTSDRSQ QGECSKDSKK ELISAVPSRG NKTRKAMNNR DVRRDSFPAS QNQFVTLSLS  540
HDSLRKGRQY LPLSFTRENG LDEPGIITLV SKDGTKLEAS LLRENKGIMC LGKGWKEFAI  600
ENGLKTGELF TLEAILEKGT PMLSLLSTES TSDRSQQGEC SKDSEKESIS AEPSKENKKK  660
KATSNREERR DSSSAIQNRY VTLTLTPEDV SACKLILPSQ FMKANGINKL GKITLVGQNR  720
TKWFAYLLSK NGIVALGSGW KGFCEANGVK TGESFTLEYI DEQDTTPVFK FWSNSVE*
Cis-element ? help Back to Top
SourceLink
PlantRegMap868325
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069541e-114AC006954.8 Arabidopsis thaliana chromosome 2 clone F25P17 map mi238, complete sequence.
GenBankCP0026851e-114CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885758.10.0B3 domain-containing protein REM12 isoform X2
SwissprotP0CAP41e-147REM12_ARATH; B3 domain-containing protein REM12
TrEMBLD7LIB40.0D7LIB4_ARALL; Predicted protein
STRINGAl_scaffold_0004_4880.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78281641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.11e-150B3 family protein