PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 867233
Common NameARALYDRAFT_666677
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 630aa    MW: 69590.5 Da    PI: 9.3774
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
867233genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.78.3e-11248848
                     HHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  8 EdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                     E++ll++av+++G+++W+++a+++        ++t+ +c++++++++
           867233  2 EELLLACAVHRHGTDSWDSVASEIHkqnptvRTLTAIDCRHKYNDLK 48
                     9*******************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.078152IPR017930Myb domain
CDDcd001673.96E-5248No hitNo description
PfamPF002492.3E-10248IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-4249IPR009057Homeodomain-like
SMARTSM002974.0E-11114373IPR001487Bromodomain
Gene3DG3DSA:1.20.920.105.5E-13247391IPR001487Bromodomain
SuperFamilySSF473707.33E-17271385IPR001487Bromodomain
CDDcd043692.25E-15275368No hitNo description
PfamPF004391.3E-10280354IPR001487Bromodomain
PROSITE profilePS5001412.582283354IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MEELLLACAV HRHGTDSWDS VASEIHKQNP TVRTLTAIDC RHKYNDLKRR FSRNLVSPGS  60
AEGEEDTLAA EISSVPWLEE LRKLRVDELR REVERYDLSI SSLQLKVKRL EDEREKSLKT  120
ENSDLDKIAE TKENHSESGN NSGVPVAEPT NSPDPNDNSP GTGSEKTNKD VKIAEPVDEE  180
PNRIDEKPVR EDSGRGSCES VAKESDRAEP EREGNDSPEF VESMDESKGE EDRKETSDGQ  240
SSASLPRKET VDQHQPGNED QSLTVNKIPA ESQPLIDFIE ILQSHPIGSH FSRRLQSQET  300
SEYDRIIRQH IDFEMIRSRV EEGYYKTSRS KFFRDLLLLV NNVRVFYGEP SSEFNVTKQL  360
YQLIKKQMSL KIPKQTLPTP KEESLVTSKE EVTVSSLKPT LSVPIIACRK RSSLAVRSSA  420
SVTETLKKKT KVVPTVDEKP VSEEEEDGTS DKDEKPIVSK KMTRGGAPST AKNVGSTNVK  480
TSLNAGISSK GRSSNDSSVP KKSVQEKKGN NASGGSKKQS AASFLKRMKG VSSSETVVDT  540
VKADSSNGKR GAEQRKSNSK NDKVDAVKPP AGQKRLTGKK PTIEKGSPAK KNTGAASKRG  600
TAPLMTKRDS ETSEKETGSS TRPKKRSKR*
Cis-element ? help Back to Top
SourceLink
PlantRegMap867233
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329770.0AL132977.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T10K17.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002878180.20.0uncharacterized protein LOC9312517 isoform X2
TrEMBLD7LVY60.0D7LVY6_ARALL; Predicted protein
STRINGAl_scaffold_0005_27120.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65302539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.10.0DNA-binding bromodomain-containing protein