PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 866071
Common NameARALYDRAFT_665515
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 377aa    MW: 42996.2 Da    PI: 5.9711
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
866071genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.73.6e-30461861128
     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknra............tksgyWkatgkd 89 
             lppGf+F P+de+++ +yLk+ ++g+k+ l +v i+ v+iy+++P++L  + +k+++kew+  ++r+k  +  ++++r+            tk gyW+at   
  866071  46 LPPGFKFMPSDEQVIFCYLKPYLDGNKNVLLDVpIHLVNIYESNPQQLSvEFCKGNDKEWFIITERNKVDQGLSKTKRVgnggttrqkrgdTKGGYWHATVGA 148
             79*************************9999999**************9667788999********9999966666665566666666666************ PP

     NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
             +e+ + ++ +vg k+ +++y  +++   ktdW+m ey+l
  866071 149 QEINA-GQGVVGYKTAFAYYVRKQSADFKTDWLMLEYSL 186
             ****9.999***********99999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-3737205IPR003441NAC domain
PROSITE profilePS5100534.1846205IPR003441NAC domain
PfamPF023653.1E-1547186IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MTMHGRNKRK ERSSPEPQTQ PPSENSSSSC LSADNLSPPS TMTYLLPPGF KFMPSDEQVI  60
FCYLKPYLDG NKNVLLDVPI HLVNIYESNP QQLSVEFCKG NDKEWFIITE RNKVDQGLSK  120
TKRVGNGGTT RQKRGDTKGG YWHATVGAQE INAGQGVVGY KTAFAYYVRK QSADFKTDWL  180
MLEYSLHHTC HNNDKDYTLC KIYLTPQATK KKKEVEAQNK KQKKGQGVIS VAPVEALEEQ  240
QPLNVEYPQP HQSQALLDSY QPQPHDIAFP QPQFSQCPLD SQQPQPHDLA YKQPHTPLLL  300
LDSLEGLVSF ENEYQQEQQS HMMMMQDSRS RMAMTSWRND ESTQEDLLDM LKDDRFFSMD  360
ELFNDVDKAS PNNFEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-144620317163NO APICAL MERISTEM PROTEIN
1ut4_B3e-144620317163NO APICAL MERISTEM PROTEIN
1ut7_A3e-144620317163NO APICAL MERISTEM PROTEIN
1ut7_B3e-144620317163NO APICAL MERISTEM PROTEIN
3swm_A3e-144620320166NAC domain-containing protein 19
3swm_B3e-144620320166NAC domain-containing protein 19
3swm_C3e-144620320166NAC domain-containing protein 19
3swm_D3e-144620320166NAC domain-containing protein 19
3swp_A3e-144620320166NAC domain-containing protein 19
3swp_B3e-144620320166NAC domain-containing protein 19
3swp_C3e-144620320166NAC domain-containing protein 19
3swp_D3e-144620320166NAC domain-containing protein 19
4dul_A3e-144620317163NAC domain-containing protein 19
4dul_B3e-144620317163NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap866071
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879736.10.0uncharacterized protein LOC9313628 isoform X1
RefseqXP_020879737.10.0uncharacterized protein LOC9313628 isoform X2
TrEMBLD7LND20.0D7LND2_ARALL; Predicted protein
STRINGAl_scaffold_0005_15500.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55210.11e-122NAC domain containing protein 63