PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 865302
Common NameARALYDRAFT_664746
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family LBD
Protein Properties Length: 100aa    MW: 11263.9 Da    PI: 4.7126
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
865302genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26029.42.2e-096693597
  DUF260 35 klFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97
            + FG+ nv+++l++l ++e++e+ +++l y A+   rd ++G+ ++il++++ l++ ++ ++++
  865302  6 QDFGVVNVCNILDNLeSPEQHEIFANCLRYAAKSSRRDSISGCPAMILHYKSILNSIEQGIKSA 69
            56*************6677799999***************************999988877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089110.958173IPR004883Lateral organ boundaries, LOB
PfamPF031957.3E-8268IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
FEDIYQDFGV VNVCNILDNL ESPEQHEIFA NCLRYAAKSS RRDSISGCPA MILHYKSILN  60
SIEQGIKSAM NEFGTYVGPD QVLKFYDFPM PAVFLLHQL*
Cis-element ? help Back to Top
SourceLink
PlantRegMap865302
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869811.11e-42LOB domain-containing protein 32
SwissprotO496513e-40LBD32_ARATH; LOB domain-containing protein 32
TrEMBLD7LM443e-68D7LM44_ARALL; Predicted protein (Fragment)
STRINGAl_scaffold_0005_7815e-69(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22700.11e-42LOB domain-containing protein 32