PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 864390
Common NameARALYDRAFT_663834
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 374aa    MW: 40702.8 Da    PI: 9.9382
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
864390genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_173.23.7e-23260323164
             XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
  bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 
             eke+kre+rkq+NRe+ArrsR+RK+ae+e+L  kv++L aeN++L+++l +lk+e++kl+ e+e
  864390 260 EKEVKREKRKQSNRESARRSRLRKQAETEQLSVKVDALVAENMTLRSKLGQLKNESEKLRLENE 323
             89*********************************************************99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077774.2E-31194IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1707.9E-17255319No hitNo description
PfamPF001701.9E-21260322IPR004827Basic-leucine zipper domain
SMARTSM003384.9E-20260324IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.76262325IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.44E-10263319No hitNo description
CDDcd147022.27E-19265314No hitNo description
PROSITE patternPS000360267282IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MGSNEEGKPT NSDKPSQAAA PEQSNVHVYH HDWAAMQAYY GPRVGIPQYY NSNVAPGHAP  60
PPYMWASPSP MMAPYGAPYP PFCPPGGVYA HPGVQMGSQL QGPVSQATPG VTTPLTMDAP  120
TNSAGNSDHG FMKKLKEFDG LAMSISNNKV GSAEHSSSEH RSSQRYIESN VVLISIAPRM  180
MALAMVVMYS SFLPQGEQSR RKIRRERSPS TGERPSSQTT PPVRGENEKA DVTMGTPVMP  240
TTMGFQNSAG MNGVPQPWNE KEVKREKRKQ SNRESARRSR LRKQAETEQL SVKVDALVAE  300
NMTLRSKLGQ LKNESEKLRL ENEALLHQLK AQATGKTENL ISRVDKNNSV SGSKNVQHQL  360
LNASPITDPV AAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276282RRSRLRK
2276283RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. GBF2 is found to bind asymmetrically to the G-box. {ECO:0000269|PubMed:1373374}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap864390
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0626670.0AY062667.1 Arabidopsis thaliana Unknown protein (GBF2) mRNA, complete cds.
GenBankAY0933160.0AY093316.1 Arabidopsis thaliana unknown protein (GBF2) mRNA, complete cds.
GenBankX638950.0X63895.1 A.thaliana mRNA GBF2 for G-box binding factor 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020878997.10.0G-box-binding factor 2
RefseqXP_020878998.10.0G-box-binding factor 2
SwissprotP427750.0GBF2_ARATH; G-box-binding factor 2
TrEMBLD7M4Y70.0D7M4Y7_ARALL; Predicted protein
STRINGAl_scaffold_0006_38990.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35712661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01120.11e-179G-box binding factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li B, et al.
    Promoter-based integration in plant defense regulation.
    Plant Physiol., 2014. 166(4): p. 1803-20
    [PMID:25352272]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]