PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 863655 | ||||||||
Common Name | ARALYDRAFT_663099 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 343aa MW: 39045.5 Da PI: 7.44 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.9 | 9.6e-54 | 9 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 +ppGfrFhPtdeel+++yLkkk++ +k+e+ evi+evd++k+ePwdL++++k ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + + +++ 863655 9 VPPGFRFHPTDEELLHYYLKKKISYQKFEM-EVIREVDLNKLEPWDLQERCKIgstPQNEWYFFSHKDRKYPTGSRTNRATHAGFWKATGRDKCIRN-SYKKI 109 69****************************.99**************964444222455*************************************9.8999* PP NAM 101 glkktLvfykgrapkgektdWvmheyrle 129 g++ktLvfykgrap+g+ktdW+mheyrle 863655 110 GMRKTLVFYKGRAPHGQKTDWIMHEYRLE 138 ***************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.81E-61 | 8 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.162 | 9 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-28 | 10 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MGSSSNGGVP PGFRFHPTDE ELLHYYLKKK ISYQKFEMEV IREVDLNKLE PWDLQERCKI 60 GSTPQNEWYF FSHKDRKYPT GSRTNRATHA GFWKATGRDK CIRNSYKKIG MRKTLVFYKG 120 RAPHGQKTDW IMHEYRLEDP DDPQANPSED GWVVCRVFMK KNLFKVVNEG GTSINSSDQH 180 NHDASNNNHT LQARSFMHRD SPYQLVRNHG ATTFELNKPD LTLHQYPPIF HKPPSLGFDY 240 SSGLARDCES AASEGLQYQQ ACEPGLEVGT CGTVASHDSH QQGLGEWAMM DRLVTCHMGN 300 EDSSRGIRFE DGNNNSSSVV QPVPATNQLT LRSEMDFWGY SK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-52 | 9 | 162 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-52 | 9 | 162 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-52 | 9 | 162 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-52 | 9 | 162 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-52 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
3swm_B | 8e-52 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
3swm_C | 8e-52 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
3swm_D | 8e-52 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
3swp_A | 8e-52 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
3swp_B | 8e-52 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
3swp_C | 8e-52 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
3swp_D | 8e-52 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
4dul_A | 7e-52 | 9 | 162 | 17 | 167 | NAC domain-containing protein 19 |
4dul_B | 7e-52 | 9 | 162 | 17 | 167 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00431 | DAP | Transfer from AT4G10350 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 863655 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY133681 | 0.0 | AY133681.1 Arabidopsis thaliana clone C103095 putative NAM/NAP (At4g10350) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002874620.1 | 0.0 | protein BEARSKIN2 | ||||
Swissprot | Q9SV87 | 0.0 | BRN2_ARATH; Protein BEARSKIN2 | ||||
TrEMBL | D7LY43 | 0.0 | D7LY43_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0006_3164 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5213 | 26 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G10350.1 | 0.0 | NAC domain containing protein 70 |
Link Out ? help Back to Top | |
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Phytozome | 863655 |
Entrez Gene | 9308578 |
Publications ? help Back to Top | |||
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